KEGG   Mercenaria mercenaria (northern quahog): 123527558
Entry
123527558         CDS       T07835                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4-like
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
mmer  Mercenaria mercenaria (northern quahog)
Pathway
mmer03020  RNA polymerase
mmer03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mmer00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123527558
  09124 Replication and repair
   03420 Nucleotide excision repair
    123527558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmer03021]
    123527558
   03400 DNA repair and recombination proteins [BR:mmer03400]
    123527558
Transcription machinery [BR:mmer03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     123527558
DNA repair and recombination proteins [BR:mmer03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      123527558
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 CCDC93_CC
Other DBs
NCBI-GeneID: 123527558
NCBI-ProteinID: XP_045163027
LinkDB
Position
14:complement(54128288..54152035)
AA seq 141 aa
MATGTTTSQDQQEEDASELQFPKEFENAETLLVSEVQMLLEHRKTQNESAEEEQELSEVF
MKTLQYTQRFSKFKNRETIAAVRSLLMQKKLHKFELAALANLCPDNAEEAKSLIPSLEGR
FEDEELQQILDDIHTKRSFQY
NT seq 426 nt   +upstreamnt  +downstreamnt
atggcgacaggcacgacaacttcacaggaccaacaagaagaagatgcttctgagctacag
tttccgaaagagtttgaaaatgcagagacattgcttgtgtctgaagttcagatgctgcta
gaacacagaaaaactcaaaatgagagtgctgaggaagagcaagaattatctgaagtgttc
atgaaaacattacaatacacacagagattttcaaagttcaaaaacagagaaacaatagcg
gctgtgagaagcttgctcatgcagaagaaattacacaagtttgagctggcagcgttagcc
aatctctgtccagataacgcagaagaagcaaagtcacttattccaagtttagagggaaga
tttgaagatgaagaattgcagcagattttggatgatatccataccaaaagaagcttccaa
tactga

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