Mercenaria mercenaria (northern quahog): 123528609
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Entry
123528609 CDS
T07835
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03013
Nucleocytoplasmic transport
mmer03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123528609
03015 mRNA surveillance pathway
123528609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123528609
03041 Spliceosome [BR:
mmer03041
]
123528609
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123528609
Spliceosome [BR:
mmer03041
]
Complex C
Other components
EJC/TREX
123528609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Pinin_SDK_N
Motif
Other DBs
NCBI-GeneID:
123528609
NCBI-ProteinID:
XP_045164381
LinkDB
All DBs
Position
1:complement(102168569..102183689)
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AA seq
575 aa
AA seq
DB search
MAELRGVNLLQNELERAKESLKDVDENIKKLTGRDPTIQRPQRRVSLGSSEPRGGKSVGA
ERIFNLARRGIQITPDDEGPRRRAGGAFSRLGPRPGGRDRGGRGRDSGDEEDSRNRPAVQ
SSVIATPKEDRSRQNSIEEQARDRKGQARNRRMFGLLLGTLQKFKDESKESKEKEEQRVK
IEKKLEEKFKQEKEEIIKERRQLFLERRKKQFRIRLIEQKMEMAQNHENWAAETRKLENF
IRTKAKPHLFYMPRILTPDSESKLRDSKAAVDAMIEERRKKLEHEIEEMMSQVHDYREDE
DEDDGDASMGEEDKGSDEEGESEGEGEHRDNKENRDRHKSEIVEEFLTERELRDREREQR
DRDRRLKDMRKEERGRRREDRGERKREGSRDRSKDGKDKSKEREKDRNHTKHRDRSRSQS
REHSRERHRSGKNRSEKRSRHHSEGERQHGHASKPKRRSKGEGKTEKREKVWEPMEDEEE
EEFVGTKDSEKDGNIQSKMLLMAGMTDVVKEKKTESEIGEIEFDKTKFLESRGIEVSNVD
KPRGVYPEMGNTDNDNLQEKSNNVDQDKSDDANTT
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggccgagttgcgtggcgtgaacttgttgcaaaacgaactcgaaagagcaaaggaaagc
ttaaaagatgttgacgaaaatataaagaagctaacaggaagagacccaactatacaaaga
cctcaaagacgtgtttctctagggagttctgagccaaggggtggcaaatctgttggagca
gagaggatattcaatcttgccaggagagggattcagattaccccggatgatgaaggaccc
aggcgaagagcaggaggagcattctcaaggcttgggccacggccaggaggacgagataga
ggagggagaggacgggacagtggggatgaggaggattcccgcaacaggcctgctgttcag
tcctcagtgattgccaccccaaaggaagacagaagtcgccagaactccatagaggaacaa
gcaagagacaggaaaggtcaagcaaggaatagaaggatgtttggtttacttttgggtacc
ttgcagaaattcaaagatgagtctaaggaatccaaagagaaggaggagcagagggtaaag
atagagaagaaacttgaggaaaagtttaaacaggagaaagaggagataatcaaagagaga
agacaactcttcctggaacggaggaagaaacagttccgtatacgcctcattgaacagaaa
atggaaatggcacaaaatcatgagaattgggcagcagaaacgagaaaattagagaatttt
attcgcacaaaagccaaacctcacctgttctacatgcctagaatcctcactccagattca
gaaagcaaactaagggattcaaaagcagctgttgatgcaatgattgaagaacgccgtaag
aagttggagcatgagatagaagaaatgatgagtcaggtacatgactacagagaagatgaa
gatgaagacgacggtgacgcaagtatgggggaggaggacaagggtagtgacgaagaggga
gagagtgagggagagggtgagcacagggataataaggaaaatagggataggcataaaagt
gagatagttgaggagttcttaactgagagggagttaagagatagggaaagggagcagaga
gacagggatagaaggcttaaagatatgagaaaggaggaaagggggagaaggagagaggat
aggggcgagaggaagagagagggtagtagggacagaagtaaagatggcaaggataagagt
aaagagagagagaaagacaggaatcatacaaaacatcgagatagatctcgttcacagagt
agagaacacagcagagaaagacataggtctggcaaaaatagatcagagaaaagaagcagg
catcacagtgaaggtgaaagacagcatggacatgcatcaaaacctaaaaggcggtctaaa
ggtgaaggtaaaactgagaagcgtgagaaagtgtgggaaccaatggaggatgaagaagag
gaagaatttgttggaaccaaagatagtgagaaagatggaaatattcagagtaagatgtta
ttaatggcaggaatgactgatgttgttaaagagaaaaaaactgagagtgagattggtgaa
attgagtttgataaaaccaaatttttagagagccgagggattgaagtttcaaatgttgac
aaacctagaggtgtatatcctgaaatgggaaacactgataatgacaatttgcaggaaaag
tcaaataatgtagaccaagataaatctgatgatgctaatacaacctaa
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