Mercenaria mercenaria (northern quahog): 123528882
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Entry
123528882 CDS
T07835
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123528882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123528882
03012 Translation factors [BR:
mmer03012
]
123528882
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123528882
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123528882
Translation factors [BR:
mmer03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123528882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
nSTAND3
PhoH
ATPase
TsaE
NPHP3_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
123528882
NCBI-ProteinID:
XP_053376866
LinkDB
All DBs
Position
13:51300428..51342007
Genome browser
AA seq
1162 aa
AA seq
DB search
MLQAFRLSSRTAARDYHTLATCFYNEMYRDDRRGRGYRGQGHWGRGGQRRYNDNDRGHPE
MEEDRYEAHDPGHGYRGNRGRGRGGRRGGSGRGHRGYAEDRRDERPGGSGRGGKERPPPG
LKGREIGMWYARRSRANAEQREKDQRPEVKMVQHQEQNIRQLLHDIKSSRDYICRFWLII
SCFWDNISNSLAVLRTALVLFKLYFIYSEEMDWFDEDKKFKKEFCDEYDGQEAEERTSNR
NVRREPESTELRVKIETGTADLNIKTEAGTADLNIETEAGTSNLSIKTEGRAADSVLEPV
IEILDDEDDELPAITEMMKFNEEEDYMIKDDEEVIIIPDSPERDQQDLDRQLSENFNQKQ
ENLAYQRMQKFRQKLPSYNDRRKIVNMIHANQVVVLSGETGCGKTTQVPQYILDDFIEQE
RGSQCRIICTQPRRISAISVAERVAAERAEACGNGNSVGYMIRLDNKLPRNDGSILYCTT
GILLKVLESDPLLHKATHIILDEIHERDLLSDFLIIILRDILQRRPDLKLILMSATLNAE
AFSKYFYDCPMINVPGFTYPVKEYLLEDVIELLRYEVPDKMLKRRPRKRREFNKAVEEEE
MREAWLRNLEGGVNTNMRCSRGTLEALRCMDMTKIDLELIKQLIKYIVTSKDDGAILVFL
PGWTDISELHKMLTRDTFFSPSAFRLIPLHSMMPTMNQREVFDRPPEGVRKIVIATNIAE
TSITIDDVVYVIDCGRIKVKGFTPENNLATLDAEMVSRANARQRRGRAGRVQPGECYHLY
TSLQESLMLDYLPPEILRTRLEELCLQIKYLKLGEILPFVKKAMQPPSLAALKSAIVNLQ
NLNALDSRENLLPLGKHLARMPLDPHTGKMILFGAMFGCLDPILTIAASLNFKDPFFIPL
GKEALADKSRIELAQGSCSDHLLLVKAFQRWERAKQRGTSRQLCYDYFMSESTLWMLQKM
RNQLAEVLHELGFIKSRNPGQETANRNSDNPALVKAVVCAGLYPNVAKIKSLPSKYRSMK
FLTKDDGRCELHPKSVAKDVHSPGTQWVVFHKKMKTTAVYVYDCSLVSPYSLLFFGGDIK
QIKEDNIDTVCVDQWIKFKASRDTVQLVKDLRQELDLVLDGKISNSRNSDWGPKSKEGAI
LRAIIDLVTTEDASSNFECKQR
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgctacaagcttttaggcttagttcaaggacagcagccagagattatcatactttggca
acctgtttttataacgaaatgtacagggatgacagaagagggagaggatatagaggtcaa
ggtcactggggtcgaggaggtcaaaggagatataatgataatgatagaggtcatccagaa
atggaagaagacagatatgaagcacatgatccgggacacggttaccggggaaatagagga
aggggaagaggaggtagacgtgggggatcaggccgaggacatagaggttatgctgaagac
aggagagatgagagaccaggtggatctggacgaggtggtaaggaaaggcctccgccaggg
ctgaaggggagggagattggcatgtggtatgctagaagaagcagagcaaatgctgaacag
agggagaaagatcagcgcccagaagtgaagatggttcaacatcaggagcaaaatattcgt
cagttgctacatgacataaagtctagtagagattatatatgcagattttggttaataatt
tcctgcttctgggacaatatttcgaatagcttggctgtcttacggacagctcttgttttg
tttaaattgtactttatttacagtgaagaaatggattggtttgatgaagacaaaaagttc
aaaaaggaattttgtgatgagtacgatggccaagaagctgaagaaagaacttcaaatcga
aatgtcagaagagaacctgaaagtacagagcttcgtgtcaaaatagaaactggaacagct
gacctaaatattaaaacagaagctggaactgctgatctaaatattgaaacagaagctggt
acatctaatctaagtattaaaacagaaggtagagcagctgattccgtactggagccagtt
attgaaatactggatgatgaggatgatgaattaccagcaataacggagatgatgaagttc
aatgaagaggaggattatatgataaaagatgatgaagaagttataataatccctgattca
ccagagagagatcagcaggatctggacaggcagttatcagagaacttcaatcagaaacag
gaaaatctcgcttatcagcgcatgcagaagttcagacaaaaactgccatcttataatgat
agacgaaaaattgtaaatatgatacatgcaaatcaagttgtggtactgagtggagaaaca
ggctgtggaaaaactacccaagtaccacagtatatcctggatgattttatagagcaggaa
agagggtcacagtgtagaattatctgtacacagcctagacgtataagtgcaatatcggta
gccgaaagagtagctgcagaaagggcagaagcatgtgggaatgggaactctgttggatat
atgattcgtcttgacaataagcttcccagaaatgatgggtctatactttattgtacaact
ggtattttgttgaaagtgcttgagagtgatccgttattacataaagccacacatatcata
cttgatgagatacacgagcgtgatctgttgtccgattttctcatcatcattctgagggat
atcctacagagacgtccagatctcaagctgatactcatgagtgctacactcaatgctgag
gcattctcaaaatacttctatgattgcccaatgatcaatgtgccaggatttacctaccct
gtgaaggagtatcttctggaagatgtcattgaactcctcaggtatgaagttccagacaaa
atgttgaagagaagacccagaaagcgcagagagttcaataaggctgtggaggaggaagaa
atgagagaggcatggctacgtaacctggaaggcggagtcaacacgaacatgagatgctca
aggggtactctggaggcattgagatgtatggacatgacaaaaatagatctggaattaatt
aaacagcttataaaatacattgttacctctaaagatgatggggcaattcttgtgttccta
ccagggtggacagatatcagtgaactgcataagatgttgacaagggatacatttttcagc
ccctctgcttttcgattgataccgttgcattcaatgatgccgaccatgaaccagcgtgaa
gtgtttgacagacctccagagggagtaagaaaaattgtcatagcaacaaatatagctgaa
acaagcataacaatagatgatgtagtgtatgtgatagattgtggaaggatcaaggtgaag
ggttttacaccagagaataacctagccacgctcgatgctgaaatggtttcacgtgccaat
gcccgacagagacgcggtagagcaggaagagtgcaaccaggtgaatgctaccatctgtat
accagtctacaggaatctctcatgttagattatctacctccagaaatattgagaaccaga
ctggaagagttgtgtctacaaatcaaatatctgaaattgggagagattttgccatttgta
aagaaagccatgcaacctccatccctggcagcattaaagtcggccattgtcaatcttcag
aaccttaatgccttagacagtagagaaaatcttctgccccttggtaaacatttggctcga
atgcctttagatccacatactggcaagatgatcctgtttggggcgatgtttggttgtttg
gatcctatactcaccattgcagctagtctcaacttcaaagatcctttctttattccactg
ggtaaagaagcattggcagacaagtcaagaatagaactagctcagggatcgtgtagtgat
catctgttattggtgaaggcattccagcgctgggagagagccaaacaacgtggtaccagt
agacaactgtgctatgactatttcatgtcagaatcaacactttggatgttacaaaagatg
agaaatcagctggctgaagttctgcatgaacttggttttatcaagtcaagaaatccgggc
caggagacagccaatagaaattctgataaccctgctcttgtgaaagctgttgtgtgtgct
ggactgtaccctaatgttgccaaaataaaatcccttccttccaaatacagatctatgaag
ttcctgacgaaagatgatggcaggtgtgagttacatccaaagtctgttgccaaggatgta
cactccccaggaacacagtgggtcgtgttccataagaaaatgaaaactacagcagtatat
gtttacgattgcagtttagtgtcgccatattctcttctgttctttggtggagatataaaa
caaattaaggaagacaacattgatactgtatgtgttgatcagtggatcaaattcaaagct
tcccgtgatactgtacagctagtcaaggatttaagacaagaactggacttggtattagat
ggcaaaatatcaaacagtaggaactctgactggggcccaaagtctaaagaaggggccata
ttaagggccattatagatctggttacaactgaagatgcctcaagtaattttgagtgtaaa
cagaggtga
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