Mercenaria mercenaria (northern quahog): 123529145
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Entry
123529145 CDS
T07835
Name
(RefSeq) uncharacterized protein LOC123529145
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123529145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123529145
03400 DNA repair and recombination proteins [BR:
mmer03400
]
123529145
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
123529145
Messenger RNA biogenesis [BR:
mmer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
123529145
DNA repair and recombination proteins [BR:
mmer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
123529145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
MMR_HSR1_Xtn
Motif
Other DBs
NCBI-GeneID:
123529145
NCBI-ProteinID:
XP_045165299
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All DBs
Position
8:23390456..23394315
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AA seq
437 aa
AA seq
DB search
MAAPIDCCQNRNYSAAISEYNKIFRSDLKSLKELQEKAITVLISGKDCICSLPTGYGKSL
IYELLPFIDHGCLVIVIAPLNAIIKQQVQKLCGMAMCFSGVNDISRLKSGEISYVFSHPE
EILQSRELNDAFTSDRLNTRKIYLVVDEAHCILQWGDEFRPEYRNLSNLRSVFKCQVLAL
SATVTESGPKQIISNLLMKNCQIICASPAKDNIELIVKKRPSPNTKGNTASSPYDFIFSH
VITELNCQLDAFPLTVVYCKSMQWIRYGYEMARQLLADNFYAGDKTQQNARVVMFHSSME
KGSGQLKDMIISSLQKADSCIRLIISSVALGMGADLKYVRRVIHAGPPTTLETYVQEIGR
SGRSDTSAQAILYYNNNDLAAQHMRNEMKVYCRGERCYRELINEYFGFKAVQKPSVCCNR
CQPEHGLEWDFDKLSIA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccattgactgttgtcagaatagaaattactcagctgctatatctgaatac
aacaaaatcttcagatcagacttgaaaagtttgaaagagttacaggaaaaagcaataaca
gttttaatcagtggaaaggattgtatatgttccctcccaactggatatggaaaatcattg
atatatgaactgcttccttttatagatcatggttgcttagtcattgtaattgctccactt
aatgcaataataaagcaacaagtacaaaaactttgtggtatggcaatgtgtttttcagga
gtgaatgacatttctagacttaaaagtggtgagattagttatgttttcagtcatcccgaa
gaaatattacagagcagagaactgaatgatgcctttacatccgacagattaaatacaagg
aaaatctatttggtggttgacgaggcacactgtattcttcaatggggagacgagttcaga
ccagaatacagaaatttgtcaaatttaagatcagttttcaaatgccaggtattagcattg
tcagcaacagtcacagagtctgggccgaaacagatcatttcaaaccttttaatgaaaaac
tgtcagataatatgtgccagtcctgccaaagacaacattgaactcattgtaaagaaaaga
ccaagtccaaatactaaaggaaacacagctagtagcccatatgacttcatttttagtcat
gttatcacagagctgaattgtcaacttgatgcatttcctcttactgtggtttattgcaag
tcaatgcagtggattagatatggatacgaaatggcgagacaacttctagcagacaacttt
tatgcaggtgataagacacaacagaatgcacgagtggtcatgtttcactcttcaatggaa
aaaggttcaggacagctgaaagacatgattatttcaagtttacaaaaggcagacagttgt
atccgcctcattatttcatcagtggcactgggaatgggggcagacttaaaatatgtaaga
cgtgtcatacatgcaggcccaccgactacactggaaacctatgttcaagagataggaaga
tcagggaggtcagatacctctgctcaagctatcctgtattataataataatgatctggcg
gctcaacacatgcgaaatgaaatgaaagtatactgcaggggtgaaaggtgctatagagaa
ttgatcaatgaatactttggcttcaaagcagttcaaaaaccttctgtttgctgcaacagg
tgtcaacccgagcatggactggaatgggactttgataaactatcaattgcataa
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