KEGG   Mercenaria mercenaria (northern quahog): 123529325
Entry
123529325         CDS       T07835                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
mmer  Mercenaria mercenaria (northern quahog)
Pathway
mmer03020  RNA polymerase
mmer03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mmer00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123529325
  09124 Replication and repair
   03420 Nucleotide excision repair
    123529325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmer03021]
    123529325
   03400 DNA repair and recombination proteins [BR:mmer03400]
    123529325
Transcription machinery [BR:mmer03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     123529325
DNA repair and recombination proteins [BR:mmer03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      123529325
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Zn_ribbon_recom DUF5886 Ogr_Delta DZR
Other DBs
NCBI-GeneID: 123529325
NCBI-ProteinID: XP_045165556
LinkDB
Position
1:complement(98119712..98138859)
AA seq 127 aa
MELYDQHDDGPGFVGIKFCKECNNMLYPKEDKESRNLLYACRNCDYQQIADNPCIYVNKI
THEVDELTQIIGDVIADPTLPRTEQHPCPRCSHKESVFFQSHSTRAEEGMRLYYVCTNPQ
CVHRWTE
NT seq 384 nt   +upstreamnt  +downstreamnt
atggaactttatgatcaacatgacgatggccctggatttgttgggattaaattttgcaaa
gaatgcaacaatatgctgtatccaaaagaagacaaggagagcagaaatcttttgtatgca
tgtaggaattgtgactaccagcagatagcagacaacccttgtatatatgtaaacaaaatc
acccatgaagttgatgagttgacccagataattggagatgtgatagcagacccaactctc
ccacgcacagaacaacatccttgtccaagatgtagtcacaaagaatctgtcttctttcag
tctcatagtacaagagcagaggagggaatgagactttactatgtgtgtaccaacccacaa
tgtgtacataggtggactgaataa

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