Mercenaria mercenaria (northern quahog): 123529746
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Entry
123529746 CDS
T07835
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123529746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmer03041
]
123529746
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123529746
Spliceosome [BR:
mmer03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123529746
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Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
Motif
Other DBs
NCBI-GeneID:
123529746
NCBI-ProteinID:
XP_053377201
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All DBs
Position
13:complement(14041292..14081948)
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AA seq
548 aa
AA seq
DB search
MTDGMLLREFLSEPDLKTYSVLIIDEAHERTLHTDVLFGLVKDIVRFRPDLKLLISSATL
DAEKFSQFFDDAPVFRIPGRRFPVDIYYTKAPEADYIDTAVVSVLQIHCTQDEGDILVFL
TGQEEIETASEMLTERTRKLGSKIKELIIAPIYANLPSDLQAKIFDPTPPGARKVVLATN
IAETSLTVDGIKYVLDPGFCKQNSYNARTGMDSLVVTPVSKASANQRAGRAGRVSAGKCF
RLYTAWAYKNELEDNTIPEIQRTNLGNVVLLLKSLGINDLIHFDFMDPPPHETLVLALEE
LYALGALNHKGELTKLGRRMAEFPVDPMLSKMILASEKYKCSKEILTITAMLSVNNSVFY
RPKDKVVHADTARRNFFLPGGDHITLMNVYNHREETGHSTQWCYENFIQYRSMKRARDVR
DQLEGIMERVEIEVSSNPLDTANIRKAITAGFFYHTAKLDKGGNYRTVKHKQTVMVHPNS
SLFEDRPKWLIYHELVFTTKEFMRQVIEIDNSWLLEVAPHYYKAKELEDGSGKKMPKNTG
KIQEEVME
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgacagatggtatgctgttaagagagttcctcagtgaaccagatctcaagacctacagt
gtgctgattatagatgaggcccatgaaaggacattacatactgatgttctgtttggattg
gtgaaagatattgtaaggtttcgacctgacctcaagcttctgatctccagtgctacatta
gatgcggaaaaattctcacagttttttgacgatgctccagttttcagaattcctggccga
cggttcccagttgatatttattatactaaggcccctgaagcagattatatagatacagct
gtggtctcggttctacagatacactgtacacaagatgaaggtgatattcttgtctttctt
actggacaggaggaaatagagacagccagtgaaatgttaactgaaagaacaaggaaactc
ggatccaaaatcaaggaactcattatagcaccaatttatgcaaatcttccctcagactta
caagcaaaaatatttgatccaaccccacctggggctcgtaaagttgtgttagcaacaaat
attgctgaaacttcattgactgttgatggtattaaatatgtgttagaccctgggttctgt
aaacagaatagttataatgcaaggacaggaatggactcattggtagtgacacctgtgtca
aaggcatcagccaatcagagagctggacgtgctggtcgtgtctcagctggaaagtgcttt
cgtctttacacagcatgggcatataaaaatgaacttgaagacaatacaataccagaaata
cagagaactaatctgggaaatgttgtgttgttacttaaaagtttaggaattaatgatctc
attcactttgactttatggacccaccacctcatgagactcttgtgttagctctggaagag
ttatatgcccttggtgcactgaatcacaaaggggagttaactaagctaggaagaagaatg
gctgaatttcctgtagatccaatgttgtcaaaaatgatcttagcatcagaaaaatacaag
tgttctaaagagattcttacaataacagcgatgttatctgtgaacaactcggttttctac
cgacccaaagacaaggttgtacatgcagatactgcacgacggaatttcttccttcctgga
ggggaccatataacattgatgaatgtctacaatcatagggaagaaactgggcactcaact
cagtggtgctatgagaactttatacagtatcggtcaatgaaaagagcaagagatgtacgt
gatcaactggagggtattatggaaagagtggaaattgaggtctcatctaatccacttgat
accgccaatattaggaaggccattacagcaggtttcttctatcacacagcaaaactagac
aagggaggtaactacagaactgtcaaacataaacaaacagttatggtccatccaaacagc
tctctatttgaagacagacctaaatggctcatctatcatgaactagtttttacaacaaag
gaattcatgagacaggtgattgagatagacaacagctggttactagaagttgctccccat
tactacaaggccaaggaactggaagatggatctggaaagaaaatgcccaaaaatacagga
aagatacaggaagaagttatggagtaa
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