Mercenaria mercenaria (northern quahog): 123529977
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Entry
123529977 CDS
T07835
Name
(RefSeq) transcription initiation factor TFIID subunit 3-like isoform X1
KO
K14650
transcription initiation factor TFIID subunit 3
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123529977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123529977
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
123529977
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromo_TP
PHD
PHD_UBR7-like
PHD_2
PHD_5
Motif
Other DBs
NCBI-GeneID:
123529977
NCBI-ProteinID:
XP_045166571
LinkDB
All DBs
Position
13:7445571..7495204
Genome browser
AA seq
1482 aa
AA seq
DB search
MTQEYSRACLRVAVAQICQHLGWNSIHTTPMELLTDVLERYLFQVGKVTHRYSEQFGRTD
ARLEDVFMAFTHMGVQVHELEDYIKHVEPLPFAKETVSYPTPQENDLKFPNPDSKEVQQR
KVFEYVPEYLPYMHPELNEEPEDTNQSARPASPERLQVEPQAIEMSPSAGDKRPVSSPGD
SSVPPFKRQRLTTSQPLPEEASQSQYEMISVVMTHSGILSPIREGKVPDSKAPPAGFKQI
VIVRQKSAGQTAAPGIHLPSDASVIKLDFNKDPSKGGKIVQVEDMEKDAGAIDFDRNDPE
YKPKAKKKFKDFKRDKLTAQKPFKIKRGPGRPRSPGRAAVVHNKGAVGFSRIPAVSGMNQ
IANAGQEGPMDLSLKPTPPPPNISVVKTEDQSKELEFMKYPDYKPKSTALSKQQEKDYED
TIDSVIGNKTSESDFDRPHHREAPVSKDKKSKQVDEWRVSHISESYAGDEDEEGERENRD
FSRPSSESSFPLPPPTMIAPHLKLLYGASPAVSVSPRPRGRPRGSGSGFYRSYAGRSPMG
GRRGRPPLHRGSPGRPPLNRSPGRPPLNRSPGRPPLNRSPGRPSSGRSPGRPKGSGMSPR
PRGRPRGSKSPRNRGASPRGGSPRAITHLKFDETNDSNDSSKATHIFKLDNEDSEATLFE
FPSRSPPPKSPKKEPSPVPASRTPPVEDRSSSVPSPAPTEPAESSGSREVSPELSPASVH
SLPFKREPTPEEETHFPPIKDRSPLKDTVVKDKEVKLDKDREKDQVNREKFEKEKTWDRE
HSRDREHKEYSREEFNEYKREHKEQSRDKEKNREYSRDREREHKEPSRDREREHKEHSRD
REREHKEHNRDKERAHKEHSRDKDREYKEHSRDRERENKEHSRDRDIIKDREHKEHSRDR
DYKEHSKDRDSRDRDHKEHSRDRDSRDRDHKEHSRDRERERSKEHRKDKKKKKKKNKDRE
KEKEDDKEKKEKHKEKKEREREKEPREESPSIPPLQKLKIKFGGGSASSPGSFSISTSKL
VASPKPEPVSPVHRPEIPKLKFKMLPPKPDASAEGDQSWVSSIKKEKSATPKHESLISSS
PRVSPSPGSRTASPKPKYGNTSDSDNNSEDEELVDKTNKSGEEEVTVSVVKGKVIVKKPA
KRGKRKGSVKKGRPKGDGSKKEESSLLFGDANEGPVAAIKREPEKEASPISPPFSPQNVP
SPITIPALKAAPPPPSPPAPSKKISPPKPKPLLKEQKPLSPLVKDTIKPKPVPVPVAKVA
KVIKSPRRLSPKKSPKISPTSKKKGSMSPPKTSPTKTFPFMEFTSPRTPSPRRSSSPSAS
APSSPMYSPASSPARDSPLHFQIPPTPAFPTRTHSPPPSPVSRQISTDEEVEGTSADKPR
MLPPELPPMPPTSAQKRAQRTVITETIGTFVNESGEKIWICPACTMQDDGSAMIGCDICD
EWYHWVCVGIEEEPSEDSSWYCPKCVKPSKSKSKRGRKKRKS
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgacacaggagtatagtcgtgcatgcctgcgtgtggcagtggcacagatatgtcagcac
ctgggatggaactcgatacacacaactcctatggaactgctcacggatgtgttagagagg
tacctcttccaggttggcaaagtcactcacagatattcagaacagtttggaagaaccgat
gctcgtttggaggatgtgtttatggcatttactcacatgggtgtacaagtgcacgagtta
gaagattatatcaaacatgttgaaccattaccatttgcaaaggaaactgtctcatatccg
acacctcaggaaaatgatttgaagttcccaaatcctgacagtaaagaagtacagcagagg
aaggtgtttgagtatgtccctgaatatctaccatacatgcatccagaacttaatgaagaa
cctgaggacactaaccaatctgccaggcctgccagtccagaaagacttcaggtggagcca
caagcgatagaaatgagcccaagtgctggtgataaaagacctgtttccagtccaggtgac
agctcggtaccacctttcaaaagacagagattaactacgtcacagccattgcctgaagaa
gcatctcaatcacagtatgagatgataagtgttgtgatgacacacagtggtattctatct
ccgatcagagagggcaaggtccctgattccaaagcacctccagcgggattcaaacagatt
gtcattgttcggcagaaaagtgccggacaaacggcggcaccaggtattcatttaccatca
gatgcatccgttataaagcttgactttaacaaagaccctagcaaaggtggtaaaattgtt
caagtggaggacatggaaaaagatgctggagcaatagattttgatagaaatgatcctgaa
tataagccaaaagcgaaaaagaagtttaaagatttcaagagggacaagttgacagcacaa
aaaccgtttaaaattaagcgaggacctggaaggcctaggtccccaggcagagcagctgta
gttcacaataaaggtgctgttggattttcaaggattccagctgtgtcaggaatgaatcag
attgcaaatgcagggcaggaggggccaatggacctgtctttgaagcctactcctccacct
ccaaacatcagtgttgttaaaacagaagatcagagtaaagaactagaatttatgaaatac
cctgattacaaacccaagtcaacagcacttagtaagcagcaagagaaggactatgaggat
acaatagattcagtgataggaaataagacttcagaatcagactttgatagacctcatcat
agagaagctcctgtatcaaaagataagaaatctaagcaagtagatgagtggcgtgtcagt
catataagtgaatcatatgctggtgatgaagacgaggaaggtgaacgtgaaaacagagat
ttttcacgacctagttcagaaagttcgtttccgctaccaccacccactatgatagctcct
catctcaaacttctgtatggggcttctccagctgtgtctgtaagcccaagacctaggggt
cgaccaagaggaagtggaagtgggttctatagaagttatgctggaaggtcaccaatgggt
ggaagacgcgggaggcctccattacacagaggaagtcctggaagaccaccacttaatcgc
agtcctggtagaccccccttaaataggagccctgggcgaccaccattaaatcgtagtcca
ggtagaccaagcagcgggcgcagtccagggcgacctaaaggttcaggtatgagtccaaga
cctagaggcagaccaagaggatcaaagagtccaagaaacaggggtgcaagccctagagga
ggaagtccaagagcaatcactcatcttaaatttgatgaaactaatgactctaacgactcg
tctaaagctactcatattttcaaactagataatgaagactcagaagcaactctgtttgaa
tttccgtcccgctccccacctccaaaatctccgaaaaaagaaccatcaccagttccggct
agcagaactcctccagtagaggataggtcttcatcagtgcccagtccagctccaacagaa
ccagctgaatcttctggctcgagggaggtatcacctgaactatcacctgcctcagttcat
tcactacctttcaagagagagccaacacctgaagaagaaactcattttcctcccattaaa
gaccgctcaccacttaaggatactgtagttaaagataaagaggtcaagctagataaggat
agagaaaaggaccaggtcaatagagaaaaatttgaaaaagaaaaaacttgggatagagaa
cacagcagggacagagaacataaggaatatagcagagaagaatttaatgaatataaaaga
gaacacaaagaacagagcagagacaaagaaaaaaatagagaatatagcagagatagagaa
agagagcacaaagaacctagcagggatagagaaagggaacacaaagaacatagtagggat
agagaaagagagcacaaagaacataacagggataaggaaagagcacacaaagaacatagc
agggataaagacagagaatataaggaacatagcagagacagagaaagagaaaataaagaa
catagtagagatagagatatcatcaaggatagagaacataaagaacatagtagagacaga
gattacaaagaacacagtaaagatagagacagcagggacagagatcacaaagaacacagt
agagatagagacagcagagatagagatcacaaagaacacagcagagatagagagcgagaa
agatctaaggaacacaggaaagataaaaagaaaaagaagaagaagaataaggatagagag
aaagaaaaagaagatgataaagaaaagaaagagaagcacaaggagaaaaaggagcgtgaa
cgcgagaaagaaccaagagaggaatcgccatcaattccacctttgcagaagttaaaaatc
aagtttggtggtggatcggcatcctcgcctggttcgttcagtattagcacatccaaactt
gttgcttcacctaaaccagaacctgtttcacctgtgcatcggccagagattccaaaatta
aagtttaagatgttgccacctaagcctgacgcatctgctgagggtgatcagtcatgggta
tcttccattaaaaaggagaaatctgcaacaccaaaacacgagtccttaatttctagctca
ccaagagtatcaccgagtccaggttctagaacagcttccccaaaaccaaaatatggtaat
actagtgattcagataacaattctgaggacgaagaattagttgataaaacaaacaaatct
ggtgaagaagaagtgactgtttctgttgtgaaaggtaaagttattgtaaagaaacctgcg
aaacgagggaaaagaaaaggctcagtaaagaaaggaagaccaaaaggggatgggtctaaa
aaggaggagtcaagtttattgtttggtgatgctaatgaaggccctgtggcagctattaaa
agggaaccagaaaaagaagcttcacctatttcacctcctttctctccccagaatgtcccg
tccccaatcactattcctgccctgaaagctgctcctcctccgccctcccctccagcacca
tctaagaaaatatcccctcccaaaccaaaacctctgctgaaggagcagaaacctttgtca
ccacttgtaaaagatacaatcaaacctaaacctgttcctgtgccagttgctaaggtagct
aaagttatcaagtctccacgccgcttatctcctaaaaagtcacctaaaatctcccctaca
tcaaaaaagaaaggaagtatgtcaccaccaaaaacatcacctacaaaaacgttccctttc
atggagtttacttcaccaagaactccgtctccacgtcgcagctccagtccatcagcatca
gctccctcctccccaatgtattccccagcatcttccccagctagagattccccacttcat
ttccagattccaccaacccctgcttttccaactcgaacccactctcctccaccctcccca
gtatccagacagatatctacagatgaagaggttgaaggaacttcagcagataaaccacgt
atgctgccacctgaattgccaccaatgccacctacatcagctcagaaacgtgctcagaga
actgttatcacagagacaattggaacatttgttaatgaatcgggagaaaagatttggata
tgtccagcatgtacgatgcaagatgatggaagtgctatgattggctgtgatatatgtgac
gagtggtaccactgggtttgtgttggtatcgaggaagagccgagtgaagactcatcctgg
tattgtccaaaatgtgtgaagccaagcaagtcaaagagcaagaggggacgtaaaaaaagg
aaaagctaa
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