KEGG   Mercenaria mercenaria (northern quahog): 123530700
Entry
123530700         CDS       T07835                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
mmer  Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:mmer00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mmer03041]
    123530700
Spliceosome [BR:mmer03041]
 Complex B
  Other components
   Complex B specific factors
    123530700
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_CDC20-Fz WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_RIG_2nd LisH_TPL Beta-prop_NWD2_C WDR90_beta-prop_4th WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_Vps41 Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_VPS8 Beta-prop_EIPR1 RMC1_N WD40_RFWD3 LisH_WDR26 Beta-prop_BBS7 Mala_s_1-like Beta-prop_WDR11_2nd Beta-prop_IP5PC_F VPS8_N
Other DBs
NCBI-GeneID: 123530700
NCBI-ProteinID: XP_045167388
LinkDB
Position
11:complement(9285832..9313471)
AA seq 513 aa
MAVEIESADVVRLIEQYLKENNLLKTLTVLQEESGISLNTVDSVDGFISDITSGHWDTVL
QAIQSLKLPDQKLIDLYEQIVLELIELRELGAARSLLRQTDPMIMLKHNQPDRYIHLENM
LARSYFDPREAYPEGQTKEKRRTAIALALSGEVNVVPPSRLLALLGQALKWQQHQGLLPP
GTTIDVFRGKAAVKEQEEEKYPTQLNKTIKFGQKAHIECAKFSPDGQYLVTGSVDGFVEV
WNFTTGKIRKDLRYQAQDNFMMMDDAVLCMCFSRDSEMLATGDQGGKIKVWKILTGQCLR
KFERAHIKGVTCVNFSKDNGQLLSASFDQTIRVHGLKSGKTLKEFTGHGSFVNDAVFTQD
GHHVISASSDGTIKVWNFKTQECQSTFKSFGGQAGTDITVNSIHPLPRNAEQFVVCNRSN
TVVIINMQGQIVRSFSSGKREGGDFICCTISPRGEWIYCVGEDMVLYCFSISTGKLERTL
TVHEKDVIGIAHHPHQNMVATYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atggcggtggaaatcgagtcggccgatgttgtacgtcttattgagcagtacttgaaagaa
aacaacctcctgaaaacactgacagtgctgcaggaggagagtggtatatcactgaacaca
gtcgactctgtagatgggtttatctcggacatcaccagcggtcactgggacactgtccta
caggccatccagtccctcaagctgccggaccagaaactgattgatctctatgaacagatt
gtactggagttgatagagttacgagaattaggagcagcaagatctctgttacgtcaaaca
gatcccatgattatgttgaaacacaatcagccagatagatatatacatctggagaacatg
ttggcaaggtcatattttgatccgagagaggcctatccagaagggcagacaaaggaaaaa
cgacgaacagctattgcgttggctttgtcaggggaggtaaatgtggtaccaccatctcgt
ttgttggccttgcttggtcaggcactgaaatggcagcaacatcaaggtctcctgccacca
ggtacaacaattgatgtgttccgaggcaaggctgcagtgaaggagcaggaagaagaaaag
tatcctacacagcttaacaaaactataaagtttggccagaaggcacacatagagtgtgct
aaattttcgcctgatggtcagtatctggtcactggctcagtggacggttttgttgaggtg
tggaactttacaactgggaaaataagaaaagatttaagataccaggcacaggacaacttc
atgatgatggatgacgctgtattgtgtatgtgttttagtagagattctgaaatgttggca
acaggggaccaagggggcaaaataaaggtgtggaagatactgactggtcaatgtttacga
aagtttgagagagctcacatcaaaggagttacttgtgttaatttctccaaagataatgga
caacttctaagtgcatcatttgatcaaacaatcagagtacatggattaaagtcagggaaa
acattaaaagagttcacaggacatggatcatttgtgaatgatgccgtgttcacacaggat
ggacaccatgttatcagtgcaagttcagatggaactattaaagtatggaatttcaaaaca
caagaatgtcagtcaacatttaagtcgttcggtggtcaggcaggtacagatatcacagta
aacagtatacatcctttacccagaaatgcagaacagtttgttgtgtgtaaccgtagtaac
acagtagtcatcatcaacatgcaaggacagattgtaagaagtttctctagtggtaagaga
gagggaggagattttatatgttgtacaatatcacctcgtggagagtggatctactgtgta
ggagaggatatggtgttatattgcttcagtatctccactggtaaactagagagaacgctc
acagttcatgaaaaagatgtgattggaatagctcatcacccacatcagaacatggttgct
acatacagtgaagatggcttactcaagctttggaaaccttaa

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