Mercenaria mercenaria (northern quahog): 123531032
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Entry
123531032 CDS
T07835
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123531032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmer03041
]
123531032
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123531032
Spliceosome [BR:
mmer03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123531032
Complex B
123531032
Complex C
U2 SnRNP specific factors
123531032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
123531032
NCBI-ProteinID:
XP_053373539
LinkDB
All DBs
Position
11:complement(62856660..62891013)
Genome browser
AA seq
743 aa
AA seq
DB search
MYSQGGDGRNRGFGFQGFAINKSDGGSVGGDGLSRMGSSGTSRAIPGRSMGYKLHFGRSR
ITDDDDYFDGDEADNAEYQPAPGSPGADQEQNKKDDSDSDDPLDAFMAGIEEEVEADFKP
KKKETKKRGEEKGVRDDIEQEDVEEAYYRYMEENPMAGVLADEQEELNVEYDNDGNIIYV
EKNKIIDPLPPIDHSDIDYEKFERNFYEEHGDIAKLSDQNINELRDKLGIRVSGLAPPKP
VCSFAHFGFDEALLEAIRKSEYSKPTPIQAQGVPIALSGRDIIGIAKTGSGKTAAFLWPL
LVHIMAQKELEKGDGPIGLILAPTRELSQQIYHECKRFGKVYNINTVCAYGGGSMWEQQK
ACQEGAEIIVATPGRLIDLVKKKATNLRRVTYLVYDEADRMFDMGFEPQVHSIANHVRPD
RQTLLFSATFRRKVEKLARDILADPIRVVQGEAGVANEDVTQIVEVLPPGPAKWTWLVKR
LVEMTTLGSVLIFVTRKANSEELATNLRSRDFQVGLLHGDMSQMERNDVITTFKKKEYPI
LVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRVGRTGRAGEKGFAFTLITEKDKEFAG
ALVRNLEAANQHVPQPLLDLAMQCPRFRQTRFKSHGRGKKPLAVIGASSGQKERPGLGAE
SSTRVQDSTSFTSFRASSALGRGPQTDRMSAMKTAFAAQYKTNFVAAVDSAPKTIPTGIH
EPENPNPFPDHSHSKRRKKSRWD
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtacagtcagggaggagatgggaggaaccgaggatttgggttccaagggttcgcaatc
aacaagtctgatggaggtagcgtaggtggcgatgggttatcaaggatgggtagttcggga
acatctcgtgctatcccaggaagaagtatgggctacaagcttcactttggtcgcagtagg
atcactgatgatgacgattattttgatggtgatgaagcagataatgctgagtaccagcca
gcccctggcagccctggagcagaccaggaacaaaacaagaaagacgacagtgacagtgat
gatccactagatgctttcatggctggcatagaggaagaggtggaagccgactttaaacca
aagaagaaagaaacaaagaaaagaggagaggaaaaaggtgtacgagacgatattgaacaa
gaagatgtagaggaagcatattatcgttacatggaggagaacccgatggccggagtacta
gcggacgaacaagaggagctaaatgttgaatatgataatgatggaaatatcatatatgtg
gagaaaaacaagataattgatccacttcccccaattgaccactcagatatagattatgaa
aaatttgagagaaatttttatgaagagcatggagacattgccaaactttctgaccagaat
atcaacgagctgagagataaactaggaatcagagtgtcgggcttagcccctccgaagcct
gtttgtagttttgctcactttggtttcgatgaggctctgctggaggctattaggaaatcg
gaatactccaagcctactcctatacaagcacagggtgttcccatagcattatctgggaga
gatatcattggtatagcaaagactggtagtggtaaaacagctgccttcctctggccactc
cttgtacatataatggctcagaaagagttggagaaaggtgatggtcctataggattaatt
ttagcaccaacgagagagttgtcacaacagatttaccatgaatgtaaaaggtttgggaag
gtatataacatcaacacagtatgtgcgtatggtggtggtagtatgtgggaacaacaaaaa
gcatgtcaggaaggagcagaaataattgttgctaccccaggtagattaatagatctggtt
aaaaagaaagccacaaatttaagaagagtcacctatcttgtttatgatgaagcagacaga
atgtttgatatgggctttgagccgcaggtacattcaatagcaaatcatgtgagacctgac
agacagacattactgttcagtgcaacattcagaagaaaagtagaaaaattggcgcgagac
attttggctgatccaatccgagtggtacaaggagaggctggtgttgcgaatgaagacgtc
acacagattgtagaggttttacctcctggacccgccaaatggacatggcttgtgaaaaga
cttgtagaaatgaccacattaggaagtgttctcatatttgttacaagaaaagcaaattca
gaggaattagcaacaaatctcagaagtcgagattttcaggttggtttgctgcatggagac
atgagtcagatggaaaggaatgatgttatcaccacatttaagaaaaaggaatatccaata
ttagtagcaactgatgtagcagcaagaggtttggatatcccatctataaaaacagtagtc
aactacgatgttgccagagatattgatacacatacacacagagtgggaagaactggtcga
gcaggagagaagggttttgctttcacactgatcacggaaaaggacaaggaatttgccggg
gctttggtacggaatttggaggcagccaatcagcacgtaccacaacctcttctagatctt
gctatgcagtgtccaagatttcgacagactcgtttcaaaagtcatgggcgtggaaagaaa
ccattggcagttataggtgcatcctctggacaaaaagaacggccagggcttggggcagaa
tccagcacacgggtacaagactctacaagttttacatcattcagagccagttcagcattg
gggagaggtccacagacagatagaatgtcggcaatgaaaacagcgtttgcagcacagtac
aagacaaactttgtggcagcagtagactcagctccgaaaacgatacctacaggcatacac
gaaccagaaaatccgaacccatttcccgaccattctcactccaagagacggaaaaagtcg
agatgggattga
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