KEGG   Mercenaria mercenaria (northern quahog): 123531303
Entry
123531303         CDS       T07835                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
mmer  Mercenaria mercenaria (northern quahog)
Pathway
mmer03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmer00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123531303
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mmer03041]
    123531303
   03036 Chromosome and associated proteins [BR:mmer03036]
    123531303
Spliceosome [BR:mmer03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    123531303
 Complex B
    123531303
 Complex C
   U2 SnRNP specific factors
    123531303
Chromosome and associated proteins [BR:mmer03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    123531303
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG DUF2298 UNC45-central
Other DBs
NCBI-GeneID: 123531303
NCBI-ProteinID: XP_053373929
LinkDB
Position
11:13080230..13104086
AA seq 1342 aa
FADIEEQVRSIQARKQALNKENYEETSPEKQRVGLGAGGHFDTDIYGSTRSKFEGYHTYI
PAEDAEDDDDVNPVETTGPVRSAAPLNALNDSLNDKEYDPMAEHRRAKISDREDDYMARR
RQMIISPERYDPFADGGKTPDPQARTYHQIMQEKALAAQEKGLREQMKDKAKAGDLKAVN
SAGSQKVQEKKKRRWDQPMSEEPAKKKASSWDQAEVGTPSQAKWDETPSKAKGSATPGAT
PGASTRMWDATPGHATPGAATPGRETPGHQATPSARRNRWDETPRAEATPGHTTPGGHQA
GWAETPKTDRAGDLIEDTPTPAASKRRSRWDETPGAQTPTMTPGNMTPSMTPGGTTPGGM
TPSGMSGMTTPGGGTPSGFTPGGLTPGGFTPSGVTPTGSKAMAMATPTPGHLMSMTPEQL
QAYTWQREIDERNRPLGDDELDGMFPPGYKVLQPPTGYIPIRTPARKLIATPTPMAATPQ
GFRMQTPDHKTSVVDMQPKGNLPMMKPDDMQYFDKLLQDVDEESLSPEEQKERKIMKLLL
KIKNGTPPMRKAALRQVTDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYK
LDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDE
YVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPH
LKSLVEIIEHGLVDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRQHRGKG
LAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVE
PQYIKDEILPPFFKHFWNQRMALDRRNYRQLVDTTVEIANKVGAAEIIGRVVDDLKDEAE
QYRKMVMETIEKVMANQGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTVVNALG
KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAIVMKTCQEEKLMGHLGVVLYEYL
GEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRI
ADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK
VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFMFEYIGEMG
KDYIYAVTPLLEDALMDRDLVHRQTSMSAIQHMALGVFGFGCEDALVHLMNYVWPNVFET
SPHVVQAFMGAIEGMRVGVGPSKVLQYALQGLFHPARKVRDVYWKVYNTVYIGAQDGMIP
AYPRVPNDAKNNFLRYELDYIL
NT seq 4029 nt   +upstreamnt  +downstreamnt
tttgcagatattgaagaacaagtccggagcatacaggccagaaaacaagctctaaacaaa
gaaaactatgaagagacctcaccagagaagcagcgagtgggtctgggtgctggtggacat
tttgacacagatatttatgggtcaacacgcagtaaatttgaaggctatcacacatatatc
cctgcagaagatgcagaggatgatgatgatgtaaatcctgtagagacaacagggccagtg
aggtcagcagcacccttaaacgctctcaatgactcacttaacgacaaggaatatgacccc
atggcggagcatcgacgagcaaagatctcggacagagaagatgattacatggcacgtcgc
cgacagatgatcatttcaccagagagatatgatccatttgcagacggtgggaagaccccc
gatccacaggcaagaacataccatcagattatgcaggagaaagctttggctgcccaggag
aaaggtttacgtgagcagatgaaggacaaggcaaaggctggagacctgaaggctgtcaac
agtgctggttctcaaaaggtgcaggaaaagaagaaacgaagatgggaccagcctatgagc
gaggaaccagcaaagaagaaagcctcatcttgggatcaggctgaagtaggaacaccatca
caggcaaaatgggatgagacaccaagtaaagctaaaggatcagcaaccccaggagccaca
ccaggtgcaagtaccagaatgtgggatgccactccaggacatgctaccccgggggcagcc
acaccaggacgtgaaaccccaggtcaccaagccacacccagtgctagaagaaatagatgg
gatgagacaccaagagctgaggctacaccaggacacacgactccaggaggtcaccaggca
ggatgggcagaaacgccaaaaactgatagagcgggagatttgattgaggacactcctact
ccggcagccagtaagagacgatcacgttgggacgaaactcctggtgcacagactccaaca
atgactcctggaaatatgaccccaagcatgaccccaggaggaacgacacctggcggtatg
acacctagcggcatgagtggcatgacaacacctgggggcgggacacctagtggtttcaca
ccagggggcctcacacctggaggtttcacaccaagtggagttaccccgactggatctaaa
gcaatggctatggcaaccccaacaccaggacacttaatgtcaatgaccccggaacaactg
caggcctacacttggcagagggaaatagatgaacgaaacaggccactcggtgatgatgaa
ctggatgggatgttccctccaggatataaggttctacaaccacctactggttacatccct
atcagaacccctgccagaaagttgatagccactcccacacctatggcggccacaccccag
ggattcagaatgcaaacaccagatcacaaaacatcagtagtggatatgcagcctaaagga
aatttgccaatgatgaagccagatgacatgcagtattttgacaagcttctacaagatgta
gatgaggaatctctgtcaccagaggaacagaaagaacgtaaaatcatgaaactgcttctc
aagatcaaaaatggaactccaccaatgagaaaggctgctctcagacaagtaacagacaaa
gctagggagttcggggccggacccttgttcaaccagatcctgcctcttcttatgtcgccg
acactggaggatcaggaacgccatctgttggtcaaggtcattgatcgtatcttatacaag
cttgatgatcttgtgcgtccatacgtgcacaagatcctggttgtgatagaaccactgttg
attgatgaagattactacgctcgtgtagaaggcagagaaatcatatctaatcttgctaag
gctgcagggctggccactatgatctccaccatgagacctgatattgacaacatggacgag
tacgtccgtaacacgacagctcgagccttcgctgtagtagcctcagctctcggcataccg
tcactgcttcccttcttgaaagctgtatgtaagagtaagaagtcttggcaggctagacat
actggtatcaagattgtacagcagattgccattcttatgggatgtgccattttaccacat
ctgaagtcacttgttgaaattattgaacatggtctggttgatgagcagcaaaaagtacgt
accatcacagctttggccctggctgccctggccgaggcagctacaccatacggtattgaa
tccttcgacagtgtgctcaaacctttatggaagggtatcagacaacatagaggaaaggga
cttgctgctttcttgaaagccattggttacttgatcccattgatggatgcagaatatgca
aactactacaccagggaagtgatgttgattcttatccgagagtttcagtctcccgacgag
gaaatgaagaagattgtgttgaaagtcgttaaacagtgttgtgccacagatggtgttgag
cctcagtacatcaaagatgagattctaccaccattcttcaaacatttctggaaccagcgc
atggctctcgacaggagaaattatcgacagcttgtagacactacagtggagatagcaaac
aaagttggggctgctgagattatcggacgagttgtggatgacctgaaagatgaggcggaa
cagtatagaaagatggtaatggagacaatagagaaggtgatggcaaatcagggtgctgca
gacattgattcaagactggaagaacagctgattgacggtatcctgtatgccttccaggaa
cagacgacagaggatgttgtaatgttgaatggttttggtactgttgtaaacgcccttggt
aaacgtgtgaaaccatacttgcctcagatctgtggtacaattctatggcgtctcaataat
aaatcagccaaggtgcgacaacaggcagctgatcttatctcgaggatcgccattgtcatg
aaaacatgtcaggaggagaagttaatgggtcatcttggtgttgtgttatatgagtacctg
ggagaagaatacccagaagtattgggaagtatccttggagccttgaaggccattgtgaat
gtgattggtatgacaaaaatgaccccacccatcaaagatctgttacctagacttacacct
atcctgaaaaacagacatgaaaaggtacaagagaactgtatagaccttgtaggtcgtatt
gctgaccgtggagcggaatatgtgtccgctagagaatggatgagaatctgttttgaattg
ttagaactgttgaaagcccacaagaaagctatcagaagagcaacagtcaacacatttggt
tatattgcaaaagctattggtccccatgacgtattagctacattactcaacaatctgaag
gtacaggaacgacagaatcgtgtgtgtacaacagtagctatagctatcgtagcagaaaca
tgttcaccattcacagtgttacccgctttaatgaatgaatatcgtgtaccagaactgaat
gtacaaaatggtgtgctcaaatctctatcctttatgtttgaatacattggtgaaatggga
aaagattatatttatgcagtaacaccactgttagaagatgctctaatggacagagatctg
gtacacagacagacttccatgtcagccatccagcacatggcccttggtgtgtttggtttt
ggttgcgaggatgcccttgttcacctgatgaactatgtgtggcctaatgtgtttgaaacc
tcaccacatgttgttcaggcatttatgggggccattgagggcatgagagtaggtgtagga
ccttcaaaagtactgcagtatgctttacagggtttgtttcatccagcacgtaaagttcga
gatgtctattggaaagtatataatactgtatatattggagcacaagatggcatgatacca
gcctatcccagggttcctaatgatgctaaaaataactttctcagatacgaactggattac
atattgtga

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