Mercenaria mercenaria (northern quahog): 123531358
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Entry
123531358 CDS
T07835
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123531358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmer03041
]
123531358
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123531358
Spliceosome [BR:
mmer03041
]
Complex C
Other components
Step II factors
123531358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
GIPC1_GH2
AAA_30
nSTAND3
RSRP
ABC_tran
nSTAND_NTPase5
Sigma54_activ_2
AAA_16
PRP38_assoc
PhoH
Flavi_DEAD
TsaE
TRAPPC9-Trs120
Cas3-like_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
123531358
NCBI-ProteinID:
XP_045168154
LinkDB
All DBs
Position
11:69273538..69311585
Genome browser
AA seq
1206 aa
AA seq
DB search
MDELQKLEHLSLVSKVCTELDNHLGMNDKDLAEFIISLAEKNDTFESFKKVLLENGAEFG
DSLIANLLRLIQKMKPKPKPVEKEVKVAKDMSDIEIKKKLFPGLALPNEVRSVSPEKDEK
IDKTDLDVADNMMGELEALMSSAKSMNKKESDKDYKRKDKEKKKKRRSRSRSRSRDRYRS
RSRSRDRKKKKRRDRERSYSRSRSRSREREKDKYRDRHRDRDRDRDRDRGDRKNRDRGHE
MPVEVEVGKIYSGKVTSIMQFGCFVSVEGVRKRSEGLVHISQLRREGRVSNVSDVVQKGQ
GVKIKILSYTGNKMSLSMKDVDQETGRDLNPKQTDAITGGERDTVNELRNPDRPSTMPLV
SVPEQNDVTERKRALRMSSPEKWEWKQMAAANVVDVTELPDFDEETGVLPKEDDSDEDIE
IEMVEEEAPFLTGHGKQGLDLSPVKIVKNPDGSLSQAAMMQSALQKERREIKQAQREAEM
NSLPTSGGSEWQDPMADGDKKLASMRGVGSAPADLPEWKKHITGGQKASYGKKEKKSLLE
QRQSLPIYKLKDELIKAVNDNQVLIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRR
VAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSQETKIKYMTEGMLLRECLIDRDLTQYQ
IMMLDEAHERTVSTDVLFGLLKEAVKKRKDLKLIVTSATLDAVKFSQYFFESPIFTIPGR
TYPVEILYTKEAETDYLDASMITVMQIHLMEPPGDILLFLTGQEEIDTACEILYERMKAL
GPEVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFV
KQNVYNAKTGMDQLIVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTNVPEI
QRTNLASVVLSLKAMGINDLLTFDFMDAPPMQTLVAAMEQLHALSALDDEGLLTRLGRRM
AEFPLEPMLSKMLIMSVHLGCSDEILTIVSMLSVQNVFYRPKDKQELADQRKAKFHQIEG
DHVTLLAVYNAWKNNKFSSPWCFENFVQVRTLKRAQDVRKQMLGIMDRHKLDVVSSGKNT
SKVQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVLTTKE
YMREVTAMDPKWLVEFAPKFFKFSDPTRLSKQKKQQKIEPLYNKYDDPNSWRISRAFRKF
HTKVTF
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggatgagctacagaagcttgagcatctctccctcgtgtctaaagtgtgtacagagctt
gacaaccatctgggaatgaatgataaagatctagctgagttcattatatcgctggctgag
aagaatgacacatttgaaagtttcaagaaggttctattagaaaatggtgctgaatttggg
gattcattaatcgctaacttgttaagactgatacagaagatgaaaccaaaacctaaacca
gttgagaaagaggtcaaggtcgcaaaggatatgtctgacattgagataaaaaagaaactt
tttccaggtctagccttaccaaatgaagtgaggagtgtgtcaccagagaaagatgaaaag
attgacaagacagacttggatgttgctgacaacatgatgggtgaattagaagctttgatg
tcctctgcaaaatctatgaataaaaaagaatcggacaaagattacaagcgtaaagacaaa
gaaaagaaaaagaagcgacgttcaagaagtcggagtcgttccagagatcgttatcgatca
aggtcacggtcgagagatagaaagaagaagaaaagaagagatagagaaaggtcatacagt
aggagcagaagtaggagcagggaaagagagaaggacaaatatagagacagacatagagac
agagacagagatagagatagggacaggggggacaggaagaacagagataggggtcatgag
atgcctgttgaagtggaagttggcaagatatactcaggaaaggttaccagtataatgcag
tttggttgttttgtatctgtggaaggtgtcagaaagagaagtgaaggacttgtacacatt
tcacagttacgcagagaagggcgtgtttcaaatgtgtcggatgttgtgcaaaaaggtcag
ggtgtaaagatcaaaatactctcttatactggaaacaaaatgagtctttcaatgaaggat
gttgatcaagaaactggtcgagacttgaacccaaagcaaacagatgctataactggtggg
gaacgagacaccgtcaatgagttacgtaatcctgatagaccgtcaaccatgcctctagtc
agtgtaccggaacagaatgatgtgactgaacgtaaaagagccctgagaatgtcgtcacca
gaaaaatgggaatggaagcagatggcggcagcaaatgtggtagatgtcacagagttacct
gactttgatgaagaaacaggggtactaccaaaggaagatgactctgatgaggatatagag
atagagatggttgaagaagaagcaccttttctcactggtcacggtaaacaagggttagat
ctcagccctgtcaaaattgttaagaatccagatggttctctgtctcaagcagctatgatg
cagagtgcgctacagaaggagaggcgagaaataaaacaggcacagcgagaagctgagatg
aactcattaccaactagtggaggcagtgaatggcaggacccaatggcagatggtgataaa
aagttggcaagtatgagaggtgtgggatcagctcctgctgaccttccagagtggaagaaa
catatcactgggggacagaaagcctcgtacggcaagaaagagaaaaaatcattgctggaa
caaagacagagtttacccatctataaacttaaagatgaacttataaaggctgtgaatgac
aaccaggtgttgattgttattggagagacgggttcagggaagacaactcagataacacag
tatctcgccgaggcaggttacactacacgcgggaagattggttgtacacaaccacgtcgt
gtagctgctatgtctgtggctaaaagagtatctgaagaatttggttgcagacttggtcag
gaggttggttacacgattcgttttgaagactgtacaagccaggagaccaagatcaaatac
atgacagagggtatgttactgagagagtgtctaatagacagagatctgacacagtatcag
attatgatgttggatgaggcccatgagaggacagtcagtactgatgttctgtttggttta
cttaaggaggcagtaaagaaaaggaaagatctgaaattgattgtgacgtctgccacacta
gatgcagtcaagttttcacagtatttctttgaatctcctattttcactattcctggtcgc
acatatcctgttgaaattttgtacacaaaagaagccgagacagactacctggatgcttca
atgataacagtaatgcagatacatttaatggagccaccgggagacattttgttgtttttg
acgggtcaggaggagattgacacagcatgtgagatattgtacgagcgtatgaaggcgctt
ggtcctgaggtaccggaacttatcatcttacctgtctatagtgctcttcccagtgaaatg
cagacaagaatctttgatccagcccctcctggttctagaaaggttgtcatagctaccaat
attgctgagacatcactgactatagatggtatatattatgttgtggatcccggatttgtc
aaacagaatgtgtacaatgcaaaaactggaatggatcaacttattgtcacacctatttca
caggcccaagcaaagcagcgtgcaggtcgcgctggccgtacaggaccgggtaaatgctac
agactatacacggaacgagcgtacagagatgaaatgttaccaacaaatgtgcctgaaatt
cagagaactaacttagcaagtgttgtgctatctttaaaagctatgggaataaatgattta
ttaacatttgattttatggatgctccgcctatgcaaacattggttgcggctatggaacag
cttcatgcactcagtgcgttagatgacgaggggctgttaacaaggcttggcagacggatg
gctgagtttccactagagcccatgttatcaaagatgttgattatgtctgtacaccttggc
tgctccgatgaaattctcactattgtgtcaatgttatctgtacaaaatgtcttctacaga
cccaaggataaacaggagttagctgaccagcgtaaagccaagttccatcagatagaaggg
gatcatgtaacattgttggcagtttacaatgcttggaaaaataataaattctccagtcca
tggtgctttgagaactttgtgcaggtgcgaacacttaaacgagcacaggatgtaaggaaa
cagatgttgggcattatggatagacacaagctcgatgtggtgtcaagtggtaagaacaca
tcgaaggtacagaaggcaatatgtagtggtttcttcaggaacgctgccaagaaagatcca
caggaaggatatagaacacttgtggacagccaggttgtctatatacacccctctagtgct
ttattcaacaggcagccagaatgggtaatatatcatgaacttgtattgacaacaaaggaa
tacatgagagaagtaacagcgatggaccctaaatggttggtcgagtttgctccaaaattc
ttcaagttctctgacccaacaagactgagtaaacaaaagaaacaacaaaagattgagcca
ttatataataagtatgacgatccaaactcatggagaatatccagggctttcagaaagttc
catacaaaagttacattctga
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integrated database retrieval system
