Mercenaria mercenaria (northern quahog): 123533295
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Entry
123533295 CDS
T07835
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123533295
03036 Chromosome and associated proteins [BR:
mmer03036
]
123533295
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123533295
Chromosome and associated proteins [BR:
mmer03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
123533295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
S1
SH2
HHH_9
Tex_YqgF
Spt6_S1
Tex_N
HHH_3
OB_RRP5_4th
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
123533295
NCBI-ProteinID:
XP_053375823
LinkDB
All DBs
Position
12:42060438..42098830
Genome browser
AA seq
1747 aa
AA seq
DB search
MSDFFEDEAEVSEASSEEGSGSGSSGSMSGSEAGSDVSGGARRKKVKKKKEKKKKKILSD
DEDDDEEEEIDEAAIAEEMKDFINEDDDVEEEVDEEEEGEGEKKRKHESEEEDDQLEDED
YDLIEENLGIKVQRAKKLKRIKRMISDDEDSEKEEETEGAAQERIANELFEGDDDVEDDD
DDARSRMTRAETEARDLAVEGSDEEDELDDFIVDDQGQPISGRKKKRHIIHSDAIFIPEC
RSQLLQEAQDIFGVDFDFDEFKDYGDEEEDEEEEDEYLDEDELEGEDGGERKVKKKRPKG
GTKASSTYEPEALSRAFMTEQDSVIRSTDMPERFQLRQTPVKETEEGELEEEADWIYKQA
FNSPPVSTQTFLDQESGGSYGYSKKGPSMVEKIKKAVDFMRNKHHEVPFIAFYRKECVEP
DLNINDLWRVWHWDERWTQLRTRKQNLIRLFERMQNYQYEMNSDPDKVLESNVRTLTEED
IDRVKKVETMEELRDVYNHFLLYYGSDIPKMRNFEKVKRREERNEERGEDEPRDDDDDHD
QVKQASRKSGYTICVKNKLDEIALRFGLTPEQFGENLRDNYQRHDVDQCPMEPLEMAADY
IAGQFPTAEEVMLGSRHMVAMQLSHDPLVRQCVRAAYFERARIHVEPTKKGIKVIDEAHP
CYSLKYLKNKPVHDLKDEQFLRLSDAEDDQILTIRISMDEETDNPNIQTYFEEIRQLYYR
DEFSHLVQQWNIQRSQALERALTKILYPQMEKELRLKLIQEAKEGILKACCRKLYNWLKV
APYQAEQQMEDDYDFDDNESGVRVLGIAYINEKDTTSFGCMVNGEGEVTDYIRLPYLKNR
TRTQREKEREEKEKDMEKLKEFIETKKPHVVAVTAENIDALMIVDDIKKVIAELEQEAQL
PPISVELVDNELAMVYANSTRADEEFREYPPVLRHAVCVARRLQDPLIEFAQLCNQDEDI
LCLKYHPLQDSLAKEDLLNALYLEFVNRVNEVGVDVNRAITNSHTAVLVQFICGLGPRKG
AALLRFLRQNSSRLENRTHLVTLCRMGPKVFINSAGFIKIDTNSLGDSTEAYVEVLDGSR
VHPEYYEWARKMAVDALEYDDTAEDANPAGALEEILESPERLKDLDLDAFAEELERQGYG
DKHITLYDIRAELNHRYKDLRTPYRSPTNEERFNMITKETPDTFYIGKLLMVRVTGIAHR
KPHGEQLDQADPVRNEETGLWQCPFCNKNDFPELSEVWSHFDNGSCPGSAVGVRARLDNG
CTGFIHIKNLSDKKVTDPLERVKVGMMVHSRIIKIDIDRFTVDLTTKSTDLLDKENQWKP
QKDLHYDMDKEKNESEKEEEKKKIQARQAYIKRVIAHPNFHNIGYKECEKILSNMDQGEC
IIRPSSKGADHLTVTWKVAEGVLHHIDIKEEGKENAFSLGRSLLIGGEEFEDLDEIIARH
IQPIASHARDIINFKNYLDSDGGKKEILEKKLYEDKKKAPSRIPYYLSSTKQYPGKFLLS
YMPRTKPRHEYVTVTTEGFRYRHKSFHSINSMMRWFKEHFRDPLVGTPSNRTPMVGQTPN
FSLQGVDAATIQRAAAGLPSNIYNTLAQVAGVTPAGVTPGVTPRVTPGFTPGFTPRTGFT
PHTPQVGGSSSSNFAGGFSGGMNYRPQNPVGSTPMMTPAGQATPSYQPTPKSQWPGATPR
TPRSSGQSTSGAKPGGSAGTDWAKAAEMWAKHKKMAPGTPRSPAVRPSPRRVEQSPAGDA
TPLFDER
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacttcttcgaggatgaggcggaggtatctgaggcatccagtgaggaggggtct
gggtcaggttctagtggttcaatgtcgggatcagaagcggggtcagatgtgtctggtggt
gcaagaagaaagaaagttaagaagaagaaagaaaagaaaaagaagaaaatactgtcagat
gacgaagatgatgatgaggaagaggagatagatgaggcagcaatagctgaggagatgaaa
gactttataaatgaggatgacgatgtagaagaagaagtggatgaggaggaagagggtgag
ggagagaagaaacgaaaacatgagtcagaggaagaagatgatcaacttgaagatgaagac
tatgatcttatcgaggaaaatcttggaattaaagtacagagggcaaagaaattgaagcgt
atcaagcgaatgatctctgatgatgaagatagcgagaaagaggaagaaactgaaggggcg
gctcaggagagaattgctaatgagttatttgagggagatgatgatgttgaggatgatgac
gatgacgcaaggtcaagaatgaccagagcagagactgaggctcgggacttggctgtagaa
ggctcagatgaagaagatgaacttgatgattttatcgtggatgatcagggccagccaatc
agtggaaggaaaaagaaaaggcacataatacactctgatgcgatttttatcccagaatgc
agatctcagttattgcaagaggcacaggatatatttggtgtagattttgactttgatgag
ttcaaggattatggtgatgaagaggaggatgaagaagaagaagatgagtaccttgatgag
gacgagctggagggagaagacggcggggagagaaaagttaagaaaaaacgacccaaaggt
ggaactaaagcttcttcaacatatgagcctgaggctttgtcgagggctttcatgacagag
caggatagtgtcatcagaagtacagacatgccagaaaggtttcagctacgtcagacccca
gtgaaggagaccgaggaaggggaactggaggaggaagctgattggatttacaaacaggcg
tttaattcacccccagtctcgacacagacatttctggatcaggagtctggtggtagctat
ggatacagtaagaaaggcccaagtatggtggagaaaataaagaaagcagtggacttcatg
aggaacaaacatcacgaagtaccatttatagccttctacagaaaagagtgtgttgaacca
gatcttaacattaatgacttatggagagtttggcactgggatgaaaggtggacacagtta
cgaaccagaaaacaaaacctgatacgtttgttcgaaagaatgcaaaattaccagtatgaa
atgaactctgacccagacaaagttctcgagagtaatgtgcgaacattgacagaggaagac
attgacagagtaaagaaagtagaaactatggaggagttacgtgatgtctacaaccatttt
ctcctttactatggctccgatattcccaaaatgcgcaattttgagaaagtgaagcgtcga
gaagagagaaatgaagaaagaggagaggatgagcccagagacgatgatgatgatcatgat
caagttaaacaagcttccaggaagtcaggatatacaatatgcgttaaaaacaaattagat
gaaatagccttaagatttgggttaacccctgaacaatttggggaaaatcttcgagataat
taccagagacatgatgtagatcagtgtccgatggaacccttggaaatggccgctgattat
atagcaggacaatttccaacagcagaagaagttatgcttggatcgcgtcacatggttgct
atgcaactgtcccatgatccgttagtgcggcagtgtgtgagagcagcttacttcgagaga
gccagaatacatgtggaacctacaaagaaaggaataaaggttatagatgaggcccatcca
tgctactcattgaagtatctgaagaacaaaccagtacatgatttgaaagatgaacagttc
ctgcgactttcagatgctgaggatgatcagattctgaccatcagaatctcgatggatgaa
gaaacagacaaccccaatatacagacatacttcgaggaaattagacagttgtattatagg
gatgagtttagtcaccttgtacaacagtggaatatacagagaagtcaagccttagagagg
gcccttaccaaaattctctatccacagatggagaaagagctccgccttaaacttatccag
gaggcaaaggagggtattctaaaggcatgttgtagaaagctgtacaactggttgaaggtt
gcgccgtaccaggcagaacaacaaatggaagacgactatgactttgacgacaatgaatca
ggtgtacgtgtgcttggtattgcctatattaatgaaaaagatacaacatcttttggttgt
atggtgaatggagaaggggaggtaactgactacattcgacttccatatctgaagaacaga
actaggacacagagggagaaggagagagaagaaaaggagaaagatatggagaaactgaag
gagtttattgaaaccaagaagccacatgttgtagctgtgactgcagaaaacatcgatgcg
ttgatgattgtggatgatatcaagaaagtgatagcagagttagaacaagaagcgcagttg
ccacctatcagtgttgagttggtagacaatgagctggccatggtgtatgcaaacagtaca
agggctgatgaggaattcagagaatatccacctgtacttcgacatgcagtgtgtgtggct
cgacgattacaggatcctctcatagagtttgctcagctgtgtaaccaagatgaggacatt
ctctgtctcaaataccatcctttacaggacagtttagcaaaggaggatttactcaatgct
ctgtatctagagtttgtgaacagagtgaatgaagtgggtgtagatgtgaacagagcaata
actaacagccatacagcagtacttgtgcaatttatctgtgggctcggacccaggaaagga
gctgcgttactccggttcttgagacagaacagttcacgtctggagaatagaacgcatcta
gtcacattgtgtagaatgggtcccaaagtgttcattaactctgctggtttcatcaaaata
gatacaaactctcttggtgacagtactgaagcctatgtagaagtgttggatgggtctcgt
gttcatccagagtactatgagtgggccagaaagatggccgttgatgctctagaatacgat
gacacagctgaagatgcaaaccctgccggggccctggaagaaatcttagaaagtcctgaa
cgtttgaaagatcttgatttggacgcttttgcagaagaattagagagacagggttatgga
gacaaacatatcacactgtatgatattcgagcagaattaaaccacagatacaaggatctg
agaacaccgtatagatctccaacaaacgaagaaagatttaacatgattaccaaggaaact
cccgatacattctatattggtaaattattgatggtacgtgttactggaattgctcacaga
aaacctcatggtgaacaacttgaccaagctgatcctgtcaggaatgaggagactggattg
tggcagtgtcctttctgtaacaagaatgactttcctgaactcagtgaggtgtggagtcat
tttgacaatggaagctgtccaggctcggctgttggtgtgcgagcaagactagacaatggt
tgcacaggatttatacacataaaaaatctcagtgataaaaaagtgacagatccacttgaa
agagtgaaggttggtatgatggtacattcaagaatcattaagattgatattgaccgattt
accgtggatctcactacaaaatctacagatctcttggataaagaaaatcaatggaaaccg
cagaaagatttgcattatgacatggataaagagaagaatgaatcagaaaaagaggaagaa
aagaagaaaatacaggctaggcaagcatacattaagagagttatagcacatcctaatttc
cacaatattgggtacaaggagtgcgagaagatattgtcaaacatggaccagggtgaatgt
atcattcgtccaagcagcaagggagccgatcatcttactgttacatggaaagtggctgag
ggagttctacatcatatagacatcaaagaggaggggaaggagaacgccttcagtctggga
cggtcgctgcttattggtggagaggagtttgaagatcttgacgaaatcattgcacgtcac
atccaacccattgcatcacatgcacgagatattatcaatttcaaaaattacttggattct
gatggagggaaaaaagaaattcttgaaaagaaattgtatgaagacaagaaaaaagctcca
tcaagaataccatactatttgagctcaaccaaacagtacccaggcaagttcctgctttct
tacatgccaagaacaaaaccacgccatgagtatgtcaccgtgacaacagaaggattccgg
tatcgacacaagagctttcactctataaactcaatgatgagatggtttaaggagcatttc
agggacccactggttggcacacccagtaacagaacacctatggttggccagacacccaac
ttcagtctccaaggtgtggatgctgccactatacagagagctgcagctggtctgccaagc
aatatctacaacacactggctcaggtggctggcgtgactcctgcgggtgtaacaccaggg
gtcactccacgagttacacccggatttacaccaggcttcactccgaggacaggtttcacg
cctcatactcctcaagttggaggatcctcaagtagtaattttgcaggtggctttagtgga
ggaatgaattacaggccccagaacccagtaggttcaactcctatgatgacaccagcaggc
caggcaacaccatcataccaacctacccctaaatctcagtggccaggtgccacgcctaga
actccaaggagtagtggtcagtctacatcaggtgccaaaccaggcggtagtgcaggtaca
gattgggcaaaggctgcagaaatgtgggccaaacataaaaagatggcaccaggcacgcct
cgtagtccagcagtacgaccttcaccaagacgcgtagaacagtcaccagctggggacgcc
actcctctgtttgatgagagatag
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integrated database retrieval system
