Mercenaria mercenaria (northern quahog): 123533749
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Entry
123533749 CDS
T07835
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03013
Nucleocytoplasmic transport
mmer03015
mRNA surveillance pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123533749
09122 Translation
03013 Nucleocytoplasmic transport
123533749
03015 mRNA surveillance pathway
123533749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123533749
03041 Spliceosome [BR:
mmer03041
]
123533749
03009 Ribosome biogenesis [BR:
mmer03009
]
123533749
03012 Translation factors [BR:
mmer03012
]
123533749
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123533749
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123533749
mRNA cycle factors
Stress granule specific factors
123533749
Spliceosome [BR:
mmer03041
]
Complex C
Other components
EJC/TREX
123533749
Ribosome biogenesis [BR:
mmer03009
]
Eukaryotic type
90S particles
Helicases
123533749
Translation factors [BR:
mmer03012
]
Eukaryotic type
Initiation factors
eIF-4
123533749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
123533749
NCBI-ProteinID:
XP_045171516
LinkDB
All DBs
Position
1:75009818..75033991
Genome browser
AA seq
399 aa
AA seq
DB search
MSSRRVLTDDLKTLEFETSEDVDVTPTFDSMGLREELLRGIYAYGFEKPSAIQQRSIKPI
VKGRDVIAQAQSGTGKTATFSISVLQCLDTQVRETQALILSPTRELATQIQKVILALGDY
MNVQCHSCIGGTNIGEDIRKLDYGQHVVSGTPGRVFDMIKRRNLRTRSIKMLILDEADEM
LNKGFKEQIYDVYRYLPPATQVILISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK
QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRDANFTVSSMHGEMV
QKERETIMKEFRSGASRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFG
RKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcggcgtgttcttacagatgatttaaaaacattagagtttgagacaagtgag
gatgttgatgttacaccaacgttcgacagcatgggtcttagagaagagctgttgagagga
atttatgcatatggttttgagaagccgtcagccattcaacagagatccatcaaaccaatt
gtcaaaggcagagatgttattgcacaggcacagtctggtacaggaaagacggcaacattc
tctatttcagttctacagtgccttgacacacaggtcagagaaacccaggcactgatatta
tcaccaacacgtgaattggcaacacagatacagaaagtcatccttgcacttggtgactac
atgaatgtacaatgtcactcgtgtattggaggtacaaatatcggggaagacatccgaaaa
ctggactatgggcagcatgtagtctcaggaacacctggcagagtatttgacatgattaaa
agaagaaacttgagaacaagatccatcaagatgttaatactggacgaagctgacgaaatg
ttgaacaaaggatttaaggaacagatttatgatgtgtacagatacctgccgccagcaaca
caggtcatattgatttcagctacactcccacacgagatcctagaaatgaccagcaagttt
atgacagacccaataaggatccttgtaaaacgtgatgaactgactctagaaggtatcaag
cagttctttgttgccgtggagagagaggaatggaagtttgatacattgtgtgatctctac
gatacactcacaataacgcaggctgttattttctgtaacacaaagagaaaggttgactgg
ctaacagagaagatgagagatgccaatttcacagtgtcttcaatgcacggagagatggtc
cagaaagaaagggagacaatcatgaaagagttcagatcaggggctagtcgagtattgata
accactgatgtgtgggcaagaggtctggacgtacaacaagtatccttggtcatcaactat
gatctgccaaacaacagagaattgtacattcacagaattggtcgatctggaagatttgga
cgtaagggtgtagccatcaactttgtcaagaatgatgatatcagaatcttgagagatatt
gaacagtactactcaacgcagattgatgaaatgcctatgaatgtcgctgatttgatataa
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