Mercenaria mercenaria (northern quahog): 123533998
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Entry
123533998 CDS
T07835
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03030
DNA replication
mmer03420
Nucleotide excision repair
mmer03430
Mismatch repair
mmer03440
Homologous recombination
mmer03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123533998
03420 Nucleotide excision repair
123533998
03430 Mismatch repair
123533998
03440 Homologous recombination
123533998
03460 Fanconi anemia pathway
123533998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmer03000
]
123533998
03032 DNA replication proteins [BR:
mmer03032
]
123533998
03400 DNA repair and recombination proteins [BR:
mmer03400
]
123533998
Transcription factors [BR:
mmer03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
123533998
DNA replication proteins [BR:
mmer03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
123533998
DNA repair and recombination proteins [BR:
mmer03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
123533998
MMR (mismatch excision repair)
123533998
DSBR (double strand breaks repair)
HR (homologous recombination)
123533998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
CDC24_OB3
IBR
HROB
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
123533998
NCBI-ProteinID:
XP_045171947
LinkDB
All DBs
Position
12:complement(32765591..32800521)
Genome browser
AA seq
610 aa
AA seq
DB search
MAFDLTEGAIEAIVSGNPCDSPVFQIISSKLISSGSGTDRYRLLLSDGRNSYSHVMLATQ
LNEMMQTGEMDNHCVVRVKQYICNTLQGDRRVMILLEVEVLAKGSEVNGRIGNPQPFKPG
QVSEQAPAQQAPVANTIANSVVNRPAQGSVVNGAKSPPSNKAAFNIKPGTPGTPGSNRIH
SIASLTPYQNRWRIRARVNQKSNIRTWSNSRGEGRLFSVNLIDESGEIRATGFTDVVDKY
YNMLEVNKVYYISKATLKTANKQYTSVKNDYEMTFNSDSIIEPCEEETDLPTMTFDFVKI
DSLESKQPNSFIDILGVVKSSADLATVTGKQSKKEIAKRDVHLVDQSGMVVNLTLWGSDA
ETFNGDSNPVIACKGCRLSDWGGRSLSVLSSSQMIINPDIREAHLLKGWWQREGQNRDFQ
AYRSEGGTGAAGSGTNWKTFGQLKNENIGHGDKPDYFTSKGTVIFLRKENSMYMACPTDQ
CNKKVIDQGNGMYRCEKCSKEFPSYKWRMILSVNLADHTGNQWVTCFQDSAELILDVKAD
DLGNMRETNEAQFDQVFTEANFKTYIFKLRAKVETYNDESRLKTVCTGATPVDWVDDAKR
LIDEINTMLN
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgacttgacagaaggtgcaatcgaggcaattgtgagtggaaacccttgtgac
agtccagttttccagattatcagcagcaagttgatatcttctggaagtgggactgacagg
tacagactcctcttgtcagatggaagaaacagctactcacatgttatgttggcaacacag
ctaaatgaaatgatgcaaacaggagaaatggacaaccattgtgtagtcagagtaaaacag
tacatctgcaatacattacaaggagatagacgagttatgatactactggaggttgaagtg
ttagctaaaggttctgaggtgaatggaaggattgggaacccccaaccatttaaacctgga
caagtttcagaacaggcaccagcccagcaagctccagttgctaacacaatagcaaacagt
gttgttaacagaccagcacaaggttctgtggtaaatggtgccaaaagccctccatcaaat
aaggcagctttcaatataaagccaggtactcctgggacacctggaagcaacagaattcac
agcattgcaagtcttacaccataccagaacaggtggcgtattcgagctcgtgtgaaccaa
aaaagtaatattcgtacctggagtaactcgcggggtgaaggacgattgttcagtgtaaac
ttgattgatgaaagtggagaaatcagagcgacaggatttacagatgttgttgacaagtac
tacaacatgttggaagtcaataaggtgtattacatttcaaaagcaaccttgaagacagca
aataaacagtacacatcagtgaagaatgactatgagatgacctttaattctgacagcatc
attgaaccttgtgaggaggagacagatttacctactatgacctttgactttgtcaaaatt
gatagcctggaatcaaaacagccaaactcttttatagatatacttggtgtggtaaaaagt
tcagctgatttagctacagtgacaggcaaacaaagcaagaaagagatcgcgaagagagat
gttcatttagtagaccagtcaggaatggttgtcaatcttacactttggggatctgatgca
gagacatttaatggtgacagtaatcctgtgatagcgtgtaaaggttgtcgtctgtcggac
tggggtggacgttcactgtctgtactgtccagcagtcagatgatcatcaatcctgacatc
agggaagcacatctgctgaaaggttggtggcagagagaaggtcaaaacagagatttccag
gcatacaggtcagaaggaggcactggagctgctggctctggtacaaactggaagacattt
ggtcagttgaaaaatgagaacattggtcatggagataaaccagactattttacatcgaag
ggaactgtcatcttcctacgcaaagaaaactctatgtatatggcatgtccgacagatcaa
tgtaataaaaaagttattgaccaaggaaacggaatgtacagatgtgagaagtgcagtaaa
gaatttcccagctataaatggagaatgatattatctgtaaatttggctgaccatactggg
aaccaatgggtgacgtgttttcaggattcagctgagttgatccttgatgtgaaagcagat
gaccttggcaatatgagagaaacaaatgaagcacagtttgaccaggtgtttacagaggca
aacttcaaaacgtacatattcaaactgagagcaaaggtggaaacctacaatgatgaaagt
cgtctgaagacggtctgtacaggtgctactccagtggattgggttgatgatgccaaaaga
ctcattgatgaaataaacactatgttaaactaa
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