Mercenaria mercenaria (northern quahog): 123534228
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Entry
123534228 CDS
T07835
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123534228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123534228
Enzymes [BR:
mmer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
123534228
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123534228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
DALR_1
POPDC1-3
Motif
Other DBs
NCBI-GeneID:
123534228
NCBI-ProteinID:
XP_045172309
LinkDB
All DBs
Position
12:67687913..67748618
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AA seq
543 aa
AA seq
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MVEVVRSSFKEQYPLIAENIRKCDFIALDTEFTGLKINEQIKSSLFDDGAERYKKLRKTI
TQITICQLGLSIFTKDQKENRYGAKTYNFYLYPQSFGPVDERFFCQASSLQFLCKYDFDF
NKFIYEGIPHLNDHQEQMIRDHIASKAMFTGLERDLDENAIQKICSKVADWLVNTDEDNK
MVLTKNEMERIPMYVLSTELRGRFPGIWTIINKEQKCIEIEKIAADKRQELEISEKSDQR
QQEEALLEKMLGFTRIFRLMKQLKKPLLAHNCMMDLMLIYDKFYKPLPVSYTEFKTNLHM
MFPKVFDTKHIASSVRREMEETGLVQYTNLGDLYKDLESEKGQELVLHPPAIVHAEGFER
YISDVLPHEAGFDAYMCGFVFLRYGHILTFKNTKSSEVIPCMFRRYLQTLENYTNRINII
RATVNHINLEGPDQESRRPELLYVRSRMFKQKLNIDQVKLAKWFSPYGSVDVKAYGQSRA
LVATSNYSCARDILRAFKKHNTIYVTKYSVWKHSPVVRGLLWSGVLLTGSVCVLALLSGD
KNS
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggttgaagttgtgaggtcttcatttaaagaacaataccctttaattgctgaaaatatc
agaaagtgtgattttattgctttggacactgaatttacaggattaaaaataaatgaacag
atcaagtcaagtttgtttgatgatggtgctgaaagatacaaaaagttgaggaagacaata
acacagataaccatttgtcagttaggtttgtcgatttttacaaaagatcaaaaagagaac
agatatggagctaagacctacaacttctacctttacccacagtcttttggaccagtagat
gaacgcttcttttgccaggcttcaagtttgcagtttctatgtaaatatgactttgacttt
aacaagtttatttatgagggaattccccacttgaatgatcaccaggagcaaatgattaga
gaccatattgcaagcaaagccatgtttactggcttagaaagagatttagatgagaatgct
atacaaaagatctgttcaaaggttgctgactggttggttaatacagatgaagataataag
atggtattgacaaaaaatgaaatggagaggatacctatgtatgtattgagcacagaactg
agaggcagattccctggtatttggactataataaataaggaacagaaatgtatagaaatt
gagaaaatagcagcagacaagaggcaagaattggaaatctcagaaaaatcagatcaaaga
caacaagaggaggcgctgttagagaaaatgctaggatttacacgtatatttagactaatg
aaacagttaaaaaagcctttactagcacacaactgtatgatggacctaatgttgatatat
gataaattctacaaaccgctacctgtatcctatacagaattcaagacaaaccttcatatg
atgtttcctaaagtgtttgatacaaaacatatcgcatctagtgtgagacgggagatggag
gagacgggtttggtgcaatacacaaatttaggtgatctctataaagatttagaaagtgag
aagggacaagaacttgtgttacatcctcctgccatagtacatgccgaagggtttgaaaga
tatatatctgatgttctacctcatgaagctggttttgatgcctacatgtgtggctttgtg
tttcttagatatggccatatactgactttcaagaatacaaagtcatcagaagttatacca
tgtatgtttaggagatatttacagacattagaaaactataccaacaggatcaacataatc
agggctacagttaatcatattaatttagagggaccagatcaggaatctagaagacctgaa
ctgctgtatgtacgaagtagaatgtttaaacaaaagttaaacattgaccaggtaaagttg
gccaagtggttttctccatatgggtctgtagatgtgaaagcctatggtcagtctagagca
cttgtggctacctcaaactacagttgtgcaagagatatcttacgagctttcaagaagcac
aacacaatttatgtgaccaaatacagcgtgtggaaacactcccctgttgttagagggctc
ctatggtcaggagttttgctgacaggaagtgtttgtgtgctggctttgctgtcaggagat
aagaattcttga
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