Mercenaria mercenaria (northern quahog): 123534327
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Entry
123534327 CDS
T07835
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03030
DNA replication
mmer03410
Base excision repair
mmer03420
Nucleotide excision repair
mmer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123534327
03410 Base excision repair
123534327
03420 Nucleotide excision repair
123534327
03430 Mismatch repair
123534327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmer03032
]
123534327
03036 Chromosome and associated proteins [BR:
mmer03036
]
123534327
03400 DNA repair and recombination proteins [BR:
mmer03400
]
123534327
DNA replication proteins [BR:
mmer03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
123534327
DNA Replication Termination Factors
ELG1-RFC complex
123534327
Chromosome and associated proteins [BR:
mmer03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
123534327
DNA repair and recombination proteins [BR:
mmer03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
123534327
Check point factors
HRAD17(Rad24)-RFC complex
123534327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
RuvB_N
AAA_22
AAA_24
AAA_14
AAA_30
AAA_16
AAA_assoc_2
DUF815
ResIII
AAA_5
DEAD
AAA_7
Mg_chelatase
AAA_28
AAA_19
PhoH
TIP49
Thioredoxin_6
PCI
DNAX_ATPase_lid
bpMoxR
Glyco_hydro_57
Motif
Other DBs
NCBI-GeneID:
123534327
NCBI-ProteinID:
XP_045172468
LinkDB
All DBs
Position
12:23338018..23357997
Genome browser
AA seq
332 aa
AA seq
DB search
MSEKEKTSPNLPWVEKYRPNNLDDLISHQDIISTINKFVSQNRLPHLLFYGPPGTGKTST
ILAVAKQMYTPAEFHSMVLELNASDDRGIGIVRGQILSFASTRTIFKKGFKLVILDEADA
MTRDAQNSLRRVIEKFTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSTDQMVPRLEHV
IREEGVNITPDGKKAVVTLANGDMRKSLNILQSCFMAYDEISEDCVYMCVGHPLRKDIEN
IMYWILNENFTTAYNNLMNLKTAKGLALQDILTEVHEYVHKVDLPMHVRLHLLEKMAEIE
FRLASGTNEKIQLSSLIAAFQVTRDMIVEEAK
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaagagaaaacaagcccaaatcttccttgggtggagaaatacagacccaat
aatttggatgatttgatttcacatcaggatattatttcaacaattaacaagtttgtgtca
cagaatcgacttccacatttacttttttatggtccaccgggtacaggaaaaaccagcaca
attcttgctgtggctaaacagatgtatacccctgctgagttccattctatggttcttgag
ttaaatgcatcagatgacagaggcattggaatcgttcggggacagatcctcagttttgcc
agcacacgaacaattttcaagaaaggtttcaaacttgtgatcctagatgaagctgatgct
atgacacgggatgcacagaattcacttaggagagtgattgagaagttcacagataatgtt
cggttctgtatcatctgtaattacctgtctaagatcatacctgccttacagtcgagatgt
acaagattcaggtttgctcctctctccactgatcagatggttcctaggttagaacatgtt
atcagagaagaaggggttaacattacaccagatggcaagaaagcagtggtcacactggca
aatggtgacatgagaaaatcactaaatatactacagagttgcttcatggcttatgatgaa
ataagtgaagactgtgtgtatatgtgtgtgggacatccacttcggaaagacattgaaaat
ataatgtactggatattaaatgaaaactttactacagcatataacaatctgatgaattta
aaaacagccaaagggttagcactacaagatattttaacagaagtacatgagtatgttcac
aaagtggatttaccaatgcatgttagactacatctcctagagaaaatggctgaaatagag
ttcagattggcttctgggacaaatgagaagatccagttgagttcactgatagctgcattt
caggttaccagggatatgatcgtggaggaagctaaatga
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