Mercenaria mercenaria (northern quahog): 123534478
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Entry
123534478 CDS
T07835
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer04142
Lysosome biogenesis
mmer04144
Endocytosis
mmer05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123534478
04142 Lysosome biogenesis
123534478
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
123534478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmer04131
]
123534478
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mmer04147
]
123534478
Membrane trafficking [BR:
mmer04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
123534478
Exosome [BR:
mmer04147
]
Exosomal proteins
Proteins found in most exosomes
123534478
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
HEAT_Nup120
TPR_Vps41
CFAP70_TPR_C
NEW1_HB
Motif
Other DBs
NCBI-GeneID:
123534478
NCBI-ProteinID:
XP_045172690
LinkDB
All DBs
Position
12:complement(50111630..50146489)
Genome browser
AA seq
1692 aa
AA seq
DB search
MSQMLPIRFQEHLQLQNVGINAANIGFSTLTMESDKFICVREKVGDTAQVVIIDMNDSSN
PIRRPISADSAIMNPASKVIALKGSAQPGDPNAGKTLQIFNIEMKSKMKAHTMTEEVVFW
KWISVNTVAIATETAVYHWSMEGDSQPQKMFDRHSNLAGCQIINYRTDAKQQWLLLVGIS
AQQNRVVGAMQLYSVERKVSQPIEGHAAAFASLKLEGNATPSTLFCFGVRGAQGGKLHII
EVGQPAQGNTPFQKKAVDVFFPPEAQNDFPVAMQVSQKHGVIFLITKYGYVHLYDIENAT
CIYMNRISGDTIFVTASHEATSGIIGVNRKGQVLSVSVEEDNIVQYIANTLQNPDLAIKV
ASRSNLPGAEDLFVKKFNMLFSSGQYSEAAKAAASAPKGILRTPATIQQFQQVPAQPGQT
SPLLQYFGILLDKGQLNKYESLELCRPVLQQGRKHLLEKWLKEEKLECSEELGDLVKSAD
PTLALSVYLRANVPNKVIQCFAETGQFQKIVLYAKKVGHTPDYIFLLRNIMRMNPEQGLQ
FAQMLVQDDEPLADLNQVVDVFMEANLIQQCTSFLLDALKNNRPSEAPLQTRLLEMNLMS
APQVADAILGNQMFTHYDKAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWL
VNYFGSLSVEDSLECLKAMLSANIRQNLQVCVQIASKYHEQLTTNALIELFESFKSFEGL
FYFLGSIVNFSQDQDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQ
LPLIIVCDRFDLVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPIVIGGLLDVDCSEDVIKQ
LILVVKGQFSTDELVAEVEKRNRLKLLLPWLEMRSHEGVVEPATHNALAKIYIDSNNNPE
RFLKENQYYDSSVVGKYCEKRDPHLACVAYERGQCDMELIKVCNENSLFKSEARYLVRRR
DPDLWAVVLQEDNEYRRQLIDQVVQTALSETQDPEDISVSVKAFMTADLPNELIELLEKI
VLESSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAITNELYEEAFAI
FKKFEVNTSAIQVLIEHVNNLDRAYEFAERCNDPAVWSQLGRAQLTGGLVKEAIDSFIKA
DDPTQYMEVVNVASNSDNWEDLVKYLQMARKKARETFIETELVYAFAKTNRLADLEEFIS
GPNHANITQVADRCFDDKMYDAAKLLYNNVSNYARLAITLVHLGEYQGAVDGARKANSTR
TWKEVCFACVNNEEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIALLEAALGLER
AHMGMFTELAILYSKFKPEKMREHLELFWSRVNIPKVLRAAEQAHLWPELVFLYDKYEEY
DNAILTMMNHPTEAWRESQFKDIITKVANIELYYKAIQFYLDFKPLLLNDLLMVLTPRLD
HTRSVTFFDRVNQIPLVKPYLRAVQKNNNKAINEALNNLFILEEDYQGLRASIDAYDNFD
NISLAQRLERHELIEFRRIAAYLYKGNNRWKQSVDLCKKDKLFKDAMLYAGESRNIEIAE
DLIAWFLENKYHECFAACLFQCYDLLRPDVILELSWRHNIMDFAMPYMIQVIREYISKVD
KLEQSESVRTEEEEKAVEQPIVFAEPQLMLTAGPGMMGAPPQGVYPQQPGYVAPGMQGMP
PGAMPQQYGYNM
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaatgctcccgatacggtttcaggagcatctgcagctccaaaatgtgggtatc
aatgcagcaaacattgggttcagcacccttacaatggagtcagacaagtttatttgtgta
cgagaaaaggttggcgatacagcgcaagttgtcatcattgacatgaatgactcatcaaac
ccaatcaggcgtccaatctcagctgactccgctatcatgaatcctgcaagtaaagtcatt
gcactaaaagggtcggcacagcctggggatcctaatgctggaaagacattacagattttc
aacattgagatgaagagcaagatgaaggctcatactatgacagaagaggtagtgttctgg
aagtggatctctgtaaacactgttgccatagcaactgagacagccgtctaccactggtca
atggaaggtgattcccaaccacagaagatgtttgaccgtcattcaaacttggcaggttgc
cagataatcaactatcgtacagatgctaaacagcagtggcttctgcttgtcggaatatca
gcacagcaaaatcgtgttgttggtgctatgcagctatattctgtagagagaaaagtgagc
cagccaatagaaggacatgcagcagcatttgcatcactcaaattggaaggcaacgcaaca
ccatccaccctcttctgttttggtgtgagaggtgcacaagggggcaagttacacataatt
gaagtaggtcagccagcacaagggaacacaccattccagaagaaagccgtggatgttttc
tttccaccagaggcacagaatgactttcctgttgccatgcaggtgagccaaaaacatgga
gtgatattcctgatcacaaagtatggatacgttcacttgtatgacattgagaatgctacg
tgtatatacatgaacagaatcagtggtgataccatctttgtcactgcctcgcatgaagca
acttcaggaattattggagtaaacagaaaaggacaggtgctgtcagtgagtgtagaggaa
gacaacattgtgcaatacattgccaacacgctgcagaatccagacctggccattaaagta
gcatcacgctcaaacttacctggagcagaggacctgtttgtaaagaaattcaacatgctg
ttctccagtggacagtacagtgaggcagcaaaagcagccgccagtgcaccaaagggtata
ttgagaacaccagccaccattcagcagttccaacaggtaccagcccagcctggccagacc
tctccactcctgcagtacttcggtatcctgcttgacaaaggccagctgaacaagtatgaa
tcccttgagttgtgtagaccagtgcttcaacaaggcaggaaacatcttctggaaaaatgg
ctgaaagaggaaaagcttgagtgtagtgaggaacttggagacttggtgaagagtgcagat
cccaccctagcattgtctgtgtacctcagagctaatgtaccaaacaaggtaattcaatgt
tttgccgagactggacaattccagaagatagtactttatgccaagaaagtgggccacacc
ccagactacatattccttctgcgtaacatcatgaggatgaaccctgagcagggcctccag
tttgcacagatgttagtacaagatgatgaacctctcgctgatcttaaccaggttgttgat
gtgtttatggaggcaaacttgatccagcaatgtacatcattcctcctggatgctctcaag
aacaacagaccatcagaggctccgctacagacaagacttcttgaaatgaacctcatgtcg
gcaccacaggtagcagatgctattctcgggaaccagatgtttacccactatgacaaggca
catattgctcagctttgtgaaaaagctggtctccttcagagagcattggaacactacaca
gacctgtatgatataaaaagagctgttgtacatacacatctgctgaatcctgagtggcta
gtgaactattttggttcattatcagtagaagactccctagaatgtttaaaggctatgttg
tcggctaacatccgtcagaacctacaagtgtgtgtacagatagcgtctaaataccatgaa
caactaactactaatgccctcattgaactgtttgagtcattcaagagctttgaaggtctg
ttctacttccttggttccattgtaaactttagtcaggaccaagatgtacacttcaagtat
attcaggcagcctgtaagaccggacaaatcaaagaagtggagagaatctgccgagagagc
aactgttatgacccagagagagttaaaaacttccttaaggaggctaaactgactgaccaa
ctgccactgatcattgtttgtgacagattcgaccttgtacatgaccttgtcctatacctg
tacagaaatagtctacaaaaatatatagaaatctatgtacaaaaggtgaatccatcacgt
ttaccaattgttattggtgggctgttggacgtagattgctcagaagatgttatcaaacaa
cttatcttggttgtgaaaggtcagttctctaccgatgagctggtagctgaggtagagaag
aggaacagactcaaacttctgttgccctggttagagatgcgctcacatgaaggcgttgtt
gagccagccacacacaatgctttagccaaaatttacattgacagcaacaacaatcctgaa
agattcttgaaggagaaccagtactatgacagtagtgttgtaggaaagtattgtgagaag
agagacccacatctggcatgcgttgcttacgaacgtggacagtgtgatatggaactgatc
aaggtgtgcaatgagaactctctgttcaagagtgaagcgagatacctggtacgaagacga
gatccagatctctgggcagtggttctacaggaagacaatgagtatagacgtcagttgatt
gatcaagttgtacagacggctctgtcagagacccaggaccctgaggatatctctgtgtca
gtgaaagctttcatgactgctgacctgccgaatgaactcattgaacttctggagaagatt
gttttggaaagctctgttttcagtgaacacaggaacttacagaacctgctcatcctgaca
gccattaaagcagaccgtacacgtgtcatggaatacattaacagattagataactacgat
gctccagacattgctaacatcgctatcacaaatgagctgtatgaggaagcatttgccatc
ttcaagaagtttgaagtcaacacttcagctattcaggtacttattgagcatgtgaacaac
ttagatagagcatatgagtttgctgagagatgtaatgatccagcagtatggagccagctt
ggtcgtgctcagctgactggaggtcttgtcaaagaagctatcgactcattcatcaaggca
gatgatcccacacagtacatggaagtcgtgaatgtggctagcaacagtgacaactgggag
gaccttgtcaagtatttacagatggcacgtaagaaggccagagagacattcattgagaca
gaactagtgtacgcttttgccaaaacaaacagactggctgacttggaagaattcatttct
ggacctaaccatgctaacattacacaggttgctgaccgttgttttgatgacaagatgtac
gatgctgctaaactgctctacaacaacgtatcaaactacgctcgtctcgccattactcta
gtccacttgggagaataccagggagctgttgatggtgctcgtaaagccaacagtaccaga
acatggaaagaggtgtgttttgcatgtgtgaacaatgaggagttccgtctagcccagatg
tgtggtttacatatagttgtgcatgctgatgaactggaggaactcatcaactactaccag
gataggggctactttgaggagctcatagcattacttgaggcagcattaggtctagaaaga
gcacatatgggcatgtttacagaattagcaatattatactccaaatttaaacctgaaaag
atgcgagaacatttagaactattctggtccagagttaacattccaaaggtccttagagct
gctgagcaggctcatctgtggcccgagcttgtgttcctttatgacaagtatgaggaatat
gacaacgccatcctgaccatgatgaaccatccgacagaagcttggcgagaaagtcagttc
aaggacatcatcacgaaagttgccaacattgagctatactacaaggctatacagttctac
ctagatttcaaacctctcctactgaacgacctactaatggttcttacccctcgtcttgat
catactcgttctgttacattcttcgatcgtgtcaaccagattcctctagttaaaccatac
ttacgggctgtgcaaaagaacaacaacaaggccattaacgaggccctgaacaatctattc
attttagaagaagattatcaaggattacgtgcgtccattgatgcttatgataatttcgat
aatatatcgttggcgcagagattagagaggcacgagttaattgagttccgtagaatagca
gcttatctttacaaaggcaacaatagatggaaacagtctgttgacctatgcaaaaaggat
aaactatttaaggatgcaatgttatacgctggagaatctagaaatatagagatagctgaa
gatttgatagcttggtttttagagaacaaataccacgagtgttttgctgcatgtctattc
caatgttacgacctactccgaccagatgttatacttgaattatcttggagacacaacatt
atggactttgcaatgccatatatgatacaagttattagagaatatattagcaaggtggat
aaactagagcagtcagagtctgtcagaactgaggaagaggagaaggctgttgaacaaccc
atcgtcttcgcagaaccccagttgatgttaactgcaggaccaggaatgatgggcgcccca
ccccagggtgtctacccacagcagcccggatatgttgcacccggaatgcagggcatgcca
cctggagcaatgcctcaacaatatggctataacatgtaa
DBGET
integrated database retrieval system
