Mercenaria mercenaria (northern quahog): 123536085
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Entry
123536085 CDS
T07835
Name
(RefSeq) nuclear pore complex protein Nup160-like isoform X1
KO
K14303
nuclear pore complex protein Nup160
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123536085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123536085
03036 Chromosome and associated proteins [BR:
mmer03036
]
123536085
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123536085
Chromosome and associated proteins [BR:
mmer03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
123536085
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_NUP160_120_M
Beta-prop_Nup120_160
TPR_Nup160_C
NUP160_helical
HEAT_Nup120
MukB_C
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
123536085
NCBI-ProteinID:
XP_053384860
LinkDB
All DBs
Position
17:complement(6584900..6640890)
Genome browser
AA seq
1446 aa
AA seq
DB search
MEKSVMLFIDVPIAATKSIGKHLCDSDNGGHGVKGASASTLQDIKVAESCGGFTYRDSGL
PLSVVRNRFIHWKACNDVLELEEESLDLDLYGSKVKFHFQDTAILGGVSIHEAQGYVVVL
VPTVASVHRLIFPHPNKLHKADLGYVPTDHPLPSIFYDASIAKCMDARNSHMLNAGGTIT
SHFTAAASFYTQEGEALFALANSSGNIILVKMPPLDIQGIVQQFELCQTSVMQKLWTGLV
PSMMRSGQEPAHTVCSLVIQAVRNEACIFAVCKDHRLRVWSCKTHECMVVTNLLDFSPDG
VHVQSMSLAGSGHIIRKLVSTNMADVKLGVHLNFTNSNQFCILQPQIASSRLQISHLASV
FGPQEDLIDFCMRSTTLVSLWTSSEGTPVIRTLTFGDEGPGGWMEVLLQPAEVADLNIPP
HRDPREVYLERLFQPGRFSKQDIRRALSLQVYSQALDQSVTGEMALNVNTLKQDVTIAVE
TEIRSAAVDYEMEEDDYYQLQLEQWSKFYSCCIQYHEVGGKLKGLFADGVTGLVGLVRKG
CVTYLRPCDQVEELYCSSEDAESSELLAEIGKTDDNQTKRDLSLLFETIRSISLEISEDL
GMQFEQELSTNQNLEMVAGQLVDHVILNHDLESALAEGASVPNNLRLIHDFTAAVNMILK
FLDLTPSMEDEQEMEGIDVNMARHMNLNKLFTSKVGCDILTLCVEQFSMTRFQLLRDLYL
LQLAALRLGNQVGLDNRSVGAIQNDLLPYTANLLRSYLVVKWASQTLAVSTQANSLESNI
RQLSSLDISESMLSGQNVGPVLIQKIDHCGASLMELFIQGPGGEKIRTDLSVTTFLDDDP
GATWSSGLLKIVKSLASLIWPLSEQFVFPEFLASHCQYLPLQDYNNLLQHWCEFNPASRC
FMQGLCYLHFDEPVKAAHCFNTAREGVANESFLRDRLLQSQETQVRKLEVLFYLKVIRQF
EEFSAPDVVISLARTAIAVADEDDQNLPTLWSKVFKYQLELGHNTEAYNSMIENPDPSRR
KDCLRQLLISLCDRGDLQSLVDFPYTDLEEEVENILESRARCMDLTTHNYYDLLYAFHIF
RNNYRKAGSVMYEHGMRLGREVPGKSGLQRQAQCYLAALNALRLVGPQYSWIIKPMLATR
PNLAAGDYMRSPKHDLEGEELINTASNFEILELHDIEKEFMLVDARLRLLAKESDPTLSA
GSTPGADEMVGLLVKAGMYDRAVIVSRAFDLPLNPVFESLTLRCINLTKNSSYYMRGDND
YTSQAWEWLKTNNLTLTHIAKENSSADEAWRLLQQYLDRYEDRTAQYHRCTAGKLLAHGF
SLPAWFINSYKGLNSAELLRLYIEYDLLEEAVSLCVEYIDAVVDTFSGHDSKLFQIKGCL
QYQAQTVWLPYTSIDLLRKALQEHRQDIHLGGLHQTLEDKLRLYMRRLKESSDQVCQPTG
QPFYVT
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atggagaaatccgtgatgctatttatagacgtgccaatcgcagccacgaaatcgatagga
aagcatctgtgtgattctgataatggaggtcacggtgtaaaaggagcctcagccagcacc
ttgcaggatatcaaagttgctgaaagttgtggtggatttacatacagagatagtggactg
cctctctcagttgtccgtaacagatttattcactggaaagcatgtaatgatgtacttgaa
cttgaagaggagagtcttgaccttgatctctatggatcaaaggtcaagttccacttccag
gacacagcaatacttggtggtgtatcaatacacgaggcccagggctatgtggttgttcta
gtacctacagtagctagtgtacacaggcttatctttccacatccaaacaagcttcataaa
gctgatctcggatatgttcctacagatcatccactgccctcaatattttatgatgcttcg
atagcaaaatgtatggatgcaagaaactctcacatgttaaatgctggtggaacgataacc
tcccattttacggcagctgcgtcattttacactcaagaaggagaagcattgtttgctctc
gccaacagttcaggaaatattattcttgtaaagatgccaccacttgatatacaaggtatt
gtacagcagtttgagctgtgccagacgtcagtgatgcagaaactatggactgggctggtt
ccctctatgatgagaagtggacaggagcctgcgcatacagtatgtagtctagtgatacag
gctgtaaggaacgaagcatgtatatttgctgtgtgcaaagatcaccgcctcagagtctgg
tcatgcaagacacatgaatgtatggttgttacaaatttactggatttctcgcctgatggt
gtacatgtccagtctatgtctctggcaggttctgggcatatcatacgaaagcttgttagt
acaaacatggctgatgtgaaactcggagttcaccttaacttcacaaattccaaccagttt
tgtatcctgcagccacaaattgcctcgagtaggttacagattagccaccttgcaagtgta
tttggacctcaggaagatttgattgacttctgtatgaggagtacaacactagtgtcgctg
tggacgagttcagaggggacacctgtaatcaggactctgacgtttggagatgaaggtcct
ggcggatggatggaggtgttgttacagccagctgaggttgcagatttaaacataccaccc
cacagagacccgagggaggtgtaccttgagaggttgttccaaccaggcaggttcagtaaa
caggacatcagaagggctctcagtttgcaggtatacagtcaggcactggaccagtctgtt
acaggggaaatggcactgaatgttaacacattgaaacaagatgtcactattgctgtggag
acagagatccgtagtgcagcggttgactatgagatggaagaggatgattattatcagcta
cagttggaacagtggtccaaattttattcctgctgtatacagtaccatgaggttggtggt
aaactgaaaggattatttgctgacggtgttactggactagttgggcttgtgagaaaggga
tgtgtaacgtacctacgaccgtgtgatcaggtggaagagctgtactgttctagtgaagac
gcagaatcctcggaacttctggctgaaatcggcaaaactgatgacaaccagacaaagagg
gatttaagccttctgtttgaaaccatacgctcaataagtctagagatttctgaagatctt
gggatgcagtttgaacaggaactatcgaccaatcagaatcttgaaatggttgctgggcaa
ctagttgatcatgtgatcttaaatcatgatttggagagtgctttagcagaaggtgcatca
gttccaaataatttgagactgatccatgatttcacagctgctgtaaacatgatattgaaa
ttcttggatctcacaccaagtatggaagatgagcaggaaatggagggaatagatgtgaat
atggcacggcacatgaacttgaataagttatttacaagcaaggttggatgtgacattctg
acactctgtgtggagcagttctccatgacaagatttcagctgttacgagatctctacctc
cttcaactggcagctttgagacttggaaatcaggttggtttagataatagatctgttgga
gcaatacagaatgacctactgccgtacactgcaaacttgttgcgatcttaccttgtggta
aaatgggcatcgcagaccctagctgtatcaactcaggcaaattctttggaatcaaacatt
aggcagctttcatcattagacatctcagagtcaatgctcagtggacagaatgtgggacca
gttcttatacagaagatcgatcactgtggcgccagtctgatggagctgtttattcaggga
cctggcggggaaaagataagaacagatctatcggtgacaacatttctcgacgatgatccg
ggtgctacatggtcctcgggactactgaaaattgtcaagtctctagcgtcattaatctgg
ccactgagtgaacagtttgtgtttccggaatttttggcaagccactgtcaatatctacct
ctacaggactacaataacttgctgcaacattggtgtgagtttaacccagcctcaaggtgc
ttcatgcagggactttgttatctacactttgatgagccagttaaagcagcccattgtttc
aatacagctagggagggcgtggcaaacgaaagttttctacgagatagactgttacaatct
caggaaacacaagtgagaaaactggaggtcttgttttacctcaaggtcattcgtcaattt
gaagagttttctgcccctgatgtggtgatctcccttgcaaggacagcaatagcagtagct
gatgaagatgaccagaacttacctaccttgtggtcaaaggtgttcaaataccagctagaa
cttggccacaacactgaagcatacaattcaatgatagagaatccagacccgagtagacgc
aaggactgtctacgtcagttgttgatcagcctctgtgaccgcggagatcttcagtcactt
gtagatttcccatacacagaccttgaagaagaggtagaaaacattctggagagccgtgcc
cgttgtatggatctcactacacataactactatgatctgctctacgcctttcatatcttc
aggaacaactacagaaaagctggaagtgtgatgtatgagcatggtatgagactggggcgt
gaggtaccgggaaaatctgggctccagaggcaggcgcagtgctaccttgctgccctaaat
gcactaagacttgttggaccacagtactcttggattatcaaacctatgctggcaactaga
ccaaatctcgctgcaggagattatatgaggtcacctaaacatgatcttgaaggagaagaa
ctgattaacacagcatcaaactttgagatcctggaattacacgacatagagaaggaattc
atgttggttgatgcacgtttacgtctccttgctaaagaaagtgatcctacactttcagca
ggcagtacaccaggggcagatgagatggttggattgctggtcaaagcagggatgtacgac
agggctgtaattgtctcaagagcttttgacttgccactcaaccctgtatttgaaagttta
accctcagatgcatcaacttgacaaagaacagctcctactatatgagaggggacaatgat
tacacttctcaagcctgggaatggctgaagacaaataatctcacactaactcacattgcc
aaggaaaacagttcagcagacgaggcatggcgactgttacagcagtatttagacaggtat
gaggaccgaacggcacagtaccaccgctgtacggcaggaaagttactagcacatggcttc
tctctacctgcatggttcatcaactcttacaagggtctaaattcagcagagctgttacgt
ttatatatagagtatgatctactagaggaagctgtcagtctgtgtgtagagtatatagat
gctgtcgtagataccttcagtggtcatgacagtaaattgtttcaaataaagggttgttta
caatatcaagcacagactgtatggttaccttacaccagtatagatctcttgagaaaagct
ttacaggaacatagacaggatatacatctaggagggttacatcaaacattagaggataaa
ctacgtttatatatgcgaagactgaaagagtcctcagaccaggtgtgtcaaccgaccggg
cagccattttatgtcacatga
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