Mercenaria mercenaria (northern quahog): 123536147
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Entry
123536147 CDS
T07835
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03008
Ribosome biogenesis in eukaryotes
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
123536147
09123 Folding, sorting and degradation
03018 RNA degradation
123536147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123536147
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123536147
03009 Ribosome biogenesis [BR:
mmer03009
]
123536147
03016 Transfer RNA biogenesis [BR:
mmer03016
]
123536147
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123536147
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
123536147
Ribosome biogenesis [BR:
mmer03009
]
Eukaryotic type
Pre-60S particles
RNases
123536147
Transfer RNA biogenesis [BR:
mmer03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
123536147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF5669
Motif
Other DBs
NCBI-GeneID:
123536147
NCBI-ProteinID:
XP_045174936
LinkDB
All DBs
Position
1:complement(62578008..62692911)
Genome browser
AA seq
998 aa
AA seq
DB search
MGVPAFFRWLSRKYPSILVHCVEEKTKEVNGVKFPVDTSQPNPNDTEFDNLYLDMNGIIH
PCTHPEDKPAPKNEQEMMILIFEYIDRIFSIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEAVETSEEIARVREELLQKGCTLPPEKPASEKFDSNCITPGTPFMFRLANCLRFYVH
DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTRHCLCGADADLIML
GLATHEPNFTIIREEFKPNKPRPCSLCGQIGHELKECQGIPKEKFGEFDEKAPVFADETP
FIFLRLNVLREYLERELQMNGLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLIKLYKNAVRRTGGYLTDSGVVALERVQLIMQELGEVEDEIFKKRRDDEMNFRRRNKE
KRRRTRRMNDKPRYIPGGMLAPQPLGRGRPGLGAPSGNVRQEAYQQRMQNFSTSSTDRDL
SNLDAAQALKSMMHSGNEERGEKRKHEAVDSDSEPEPEDDVKLWEDGWKDRYYKNKFDVG
SEDIAFRHNVANHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNVAALSNDFEKD
TEPFKPLEQLMGVFPAGSKQHVPPTWQELMTNPESPIIDFYPINFKIDLNGKKYAWQGVA
LLPFVDEKRLWKALDTVYPDLTDAEIKRNIRGNDRLFVSQSHPAHSFLEALYEENRNDKT
QLDMNTSLSQGMGGKVWGDEFVYLTGETVKSPLPQLADLEDNRVISVQYHDPTYEKGFLF
QAKVLPGAVMPERALKPEDFEKFNRNQQYRPQLGFQKDSGYRGRRDMGPANRMIRGGANI
GPPSSYGQGGQGYRSYNQSNRGGGGGYNNGGYGGYGGRQGGGWMPPALPHVNPNMNQGNQ
GYQRNQSGPMNAFQRNTQAQSGGYGRHSQEGGATGYGYGNASSYGGSYNSGGGSRYGGSY
STSYSGGGSGGNRNQQGNRNDTYGKDNRGYPLPPGYRR
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccagcattttttcgctggttaagtaggaagtatccgtctattcttgttcac
tgtgttgaggaaaagactaaagaggtaaatggtgtgaagtttccagtggatacaagccag
ccaaatccaaacgatacagagtttgataatctctacctggatatgaatggtatcatacat
ccttgcacacatccagaagacaagccagctccaaaaaatgagcaggaaatgatgatcctg
atatttgaatacatcgacagaatcttttccattgtccgccccagaagggtactgtacatg
gctatagatggagtggctccaagagcaaagatgaatcagcaaagaagtagacgattccga
gcttcaaaggaagcagtggaaacatcagaagaaatagctcgtgtaagagaagagttgtta
cagaaaggctgtacccttcctcctgaaaaacctgcttcagaaaagtttgatagcaactgt
atcacacctggaacaccatttatgttcagacttgccaattgtctgagattctacgtccat
gatagattgaacaatgaccccggatggaaaggtataaaggttatactgtctgatgccaac
gttcctggagaaggtgaacataagatcatggactatatcagaaaacagagagcacaacca
gatcatgatcccaataccagacattgtctgtgtggagctgatgctgatttgatcatgtta
ggtctggccactcatgaaccaaactttaccataatcagagaggaattcaaacccaacaaa
ccaaggccctgcagtctgtgtggtcagataggccatgaactgaaagaatgtcagggaata
cccaaggaaaagtttggtgaatttgatgagaaggcaccagtatttgcagatgaaacaccg
tttatatttttgcgactcaatgttctgagagagtatttagaaagagagctacagatgaat
gggcttccatttccgtatgactttgagagagccttagatgactgggtgtttatgtgtttc
tttgttggaaatgattttttaccacacttgccatcacttgaaatcagagaaggtgcaata
gacagattaataaagctgtacaaaaatgcagtcagaaggacagggggttaccttacagac
agtggtgttgtggccttggagagagtacaacttataatgcaagagttgggagaggtagaa
gatgaaatcttcaagaaaagacgagatgatgaaatgaatttccgcagaagaaataaggaa
aaaaggagaagaacaagaaggatgaatgacaagccacgatatattcctggaggaatgttg
gccccacagccacttggacgaggtcgaccaggtctgggagccccgtcaggtaatgtgaga
caggaagcataccagcagagaatgcagaacttttccacatcatcaacagatagagatctc
tcaaaccttgatgcagctcaggcactcaaatctatgatgcactctgggaatgaagaaaga
ggagagaaacgtaaacatgaggctgttgacagtgatagtgaaccagaaccggaagatgat
gtcaaattatgggaagatggttggaaggacaggtactacaaaaacaagtttgatgttgga
tcagaggatattgctttcagacataatgttgcaaaccactatgtacgtgggttatgttgg
gtgttgcggtactattaccaaggctgtgcctcctggaaatggtacttcccctatcattac
gcaccatttgcatcagattttgtcaacgttgctgcactgtcaaatgattttgagaaagat
acagaacctttcaaacctttggaacagttgatgggcgtgttcccagcaggtagcaagcag
catgtaccgcctacatggcaagagctgatgacaaatccagaatctcccatcattgatttc
tatccaatcaattttaaaattgatctcaatggcaaaaaatatgcctggcaaggtgtggca
ttgttaccatttgttgatgagaagaggttatggaaagccttagatacagtatatcccgat
ctcacagatgctgaaataaagagaaacatccgtggaaatgacagactgtttgttagccag
tcccatcctgcacattctttcctggaagcactttatgaggaaaacagaaatgacaaaact
caattagacatgaatacatcactgtctcagggaatgggaggcaaggtttggggagatgag
tttgtttacctaacaggagaaactgtgaaaagtcccttacctcagctagctgatcttgaa
gataacagagtaataagtgtacaataccatgatccaacatatgagaaaggtttcctgttt
caagcaaaagttttaccaggggcagttatgcctgaacgtgccttgaagcctgaagacttt
gagaaatttaaccgaaatcagcagtatcgtccacagctaggcttccagaaagacagtggc
tacaggggtcgcagagatatggggccggctaatagaatgataaggggcggtgcaaacata
ggtccaccttcatcgtacggtcaaggtggtcaaggctaccgaagctacaatcaaagtaat
agagggggtggaggtggctataacaatggaggctatggtgggtatggtggcagacaagga
ggaggttggatgcctcctgcattacctcatgttaacccaaacatgaaccagggtaaccaa
ggttaccagaggaaccagtctggtccaatgaatgcatttcagagaaatacgcaggcccag
tccggaggctatggtagacacagtcaggaaggcggggctaccggatacggatatggcaat
gcaagttcatatggtggctcatataacagtggtggcggttcccggtatgggggatcatac
tctacatcatacagtggtggtggaagtggagggaacaggaaccagcaaggaaacagaaat
gacacatatgggaaagacaacagagggtaccccttgccccctggttacagaagatga
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