Mercenaria mercenaria (northern quahog): 123537632
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Entry
123537632 CDS
T07835
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
123537632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123537632
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123537632
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123537632
RNA polymerase I system
123537632
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
123537632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW6_SPT5
KOW5_SPT5
KOW2_Spt5
KOW
KOW7_SPT5
Spt5-NGN
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF4744
Motif
Other DBs
NCBI-GeneID:
123537632
NCBI-ProteinID:
XP_045177406
LinkDB
All DBs
Position
17:55766216..55822750
Genome browser
AA seq
1054 aa
AA seq
DB search
MSDSEFSDAESGGAGSGADSEGEDNVSDQGSDEDSVSAPHKKRNVIQSEDDDSDDDTPKQ
KKRKISGSDDDDDLDDLDDFDEEEEEEERMRGKKKKPRHGGFILDEAEVDDDDEEEDELD
WEEGAAELIERKSTYEGPTAKEMESNRRLNELMNNQTEDEIEAYYRQKYGDSSALDRFGE
GEEMSDEITQQGLLPGVKDPNLWLVKCRIGEERQTALQLMRKFIAYQFSDEPLQIKAVIA
KESLKGYIYIEAYKQTHVKQAIDGVGSLKLGQWAQMMVPIKEMTDCLKVVKETAILKPKS
WVRLKRGIFKDDLAQVDYVESAQNAVHLKLLPRIDYTRMRGIMRNQQSDAERKKKKRRPA
QKLFNIDDVKAIGGESSRDGDFFIFEGNKYSRRGFLFKTFAMSAIIAEGVKPTLAELEKF
EDQPENINIDIIPDKSSGEVTHNFTPGDVVEVCEGELIHLQGKIISIDGNKITMIPKHED
LKDPLEFPAHELKKHFKTGDHVKVIGGKYEDDTGLIVRVEDNIVVLFSDLTMHELKVLPK
DLQLCADMATGVDSLGQFQFGDLVHLDPQTVGVIVRLEKENFQVLSMHNKVQNVKPQAIT
RKKDTKHAVALDSENNNVSVKDIVKVVDGPHSGRDGEIKHLYRSFAFLLSRKMTENGGYF
VCKTRHLVLAGGQSKSNVSVGMPGFMSPRLSSPAHPGSGGSTPGRGRGGGGVGMKRDREM
IGQTVRIVQGPFKGYIGIVKDSTDSTARVELHSSCKTISVDKSRLASLTGGRPSGGRTST
YGGRTPVYGGQTPMYGSRTPMYGSQTPLHDGSRTPHYGSQTPQHEGSGTPGRSGAWDPAN
ANTPSRSQDFDYQLDDTVSPASDVHSPVGGPFTPQTPGSAYSPYNPSPGSSYQANSPGLG
GSSPSPLGYQASPSPSAYAGYSPMTPGAPFTPQTPGTAMDHVNADWHTTEIEVRIKETHD
DADLIHQTGVIRSVTGGMCSVFLPEEDKVVNVSCEHLEPVLPEKNDKAKVILGEEREATG
SLLSIDGGEGVIKLDGGEKNIKMLPIRYLCKMPS
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgagttttctgatgcagagagtggaggggctggatctggtgcagacagt
gagggagaggacaatgtatctgatcagggctcagatgaggatagtgtgagtgctcctcat
aagaagcggaatgtcattcagagtgaggatgatgacagtgatgatgacacacccaaacag
aaaaaacggaagattagtggcagtgatgatgatgatgatcttgatgacttggatgacttt
gatgaagaagaagaagaagaagaaagaatgagaggaaagaagaagaaacctcgccatgga
ggatttatccttgatgaggctgaggttgatgatgatgatgaagaagaggatgagttggac
tgggaagaaggagcggcagaactcatcgaaagaaaatccacatacgagggaccaactgca
aaagaaatggaaagcaatagacgtctgaatgaattaatgaataaccagacagaagatgag
attgaagcatactatagacagaaatatggagacagttcggccctggacagatttggtgaa
ggcgaggaaatgtcagatgaaattacacagcagggactcttacctggtgtaaaggaccct
aacctgtggttggtgaagtgtcgtataggagaggagagacagactgccttacagctaatg
agaaagtttatagcataccagttctcagatgagcccttacaaattaaggctgtgatagca
aaggaaagtttgaaggggtatatctacatagaagcatacaaacagacgcacgtgaaacaa
gccatagatggtgtaggcagcctgaaacttggacaatgggcccagatgatggttccaatc
aaagaaatgacagactgtttaaaagtggtcaaagagacagcaattttaaagccaaagtct
tgggtgcgtttgaaacgtggaatcttcaaggacgaccttgcacaggtggattatgtagag
tcggcccagaatgcagtgcacttgaaactgttgccaagaatagattacacacgaatgagg
gggatcatgaggaatcagcagtcagatgcagagagaaagaagaagaaaagaagaccagct
cagaaattattcaatattgatgatgtcaaagctattggtggagaaagttcgcgagatgga
gatttctttatatttgaaggcaacaaatacagtcgtagaggattcttgtttaaaactttt
gccatgtctgctattattgcagaaggagtgaaaccaacactggcagagttagagaaattt
gaagatcaaccagaaaatatcaatatagacataatcccagataaaagttcaggggaggta
actcacaatttcacaccaggagatgtggtcgaggtctgcgaaggggagttaattcatctg
cagggtaaaattatcagtatagatggaaacaagatcacaatgattccaaagcacgaggat
cttaaggaccctctggagttcccagctcatgagttaaagaagcattttaagactggtgac
catgtaaaagtgattggtgggaagtacgaggacgatacaggtctgattgtacgagtggaa
gacaatattgtagtgctgttttcagatctaaccatgcatgagttgaaagtgttaccgaag
gacttgcagctatgtgctgatatggcaactggtgtggattctcttggacagtttcagttt
ggagatttagtacatctagatccacaaacagttggagttattgtgagactggagaaagaa
aactttcaagttcttagtatgcataataaggttcagaatgtgaagccccaggccatcact
agaaaaaaggatacgaaacatgctgtagcacttgactctgaaaacaataatgtgtcggtt
aaagatattgtcaaagttgtagatggtccacattcgggacgtgatggagaaattaaacat
ctgtatcgtagctttgcattccttttgtccagaaaaatgacagaaaatggaggttatttt
gtctgcaaaactcggcatcttgttctagctggcggacagtcaaagtccaatgtctctgtt
ggaatgccaggttttatgtcaccacgtctttctagtcctgcccatcccggcagtggtgga
tctacacctggacgtggtcgtggaggaggtggtgtgggcatgaaacgagacagagaaatg
attggtcagactgttagaattgttcaaggtccattcaaaggttatattgggattgtgaag
gactctacagattctacagcgagagtagagttacattccagctgtaaaaccatctcagta
gacaaatctcgtctcgcttctctcactggtggtagacctagtggtggtagaacatccaca
tatggaggccggacaccagtttatggtggtcagacacctatgtatggttcccgtacacca
atgtatgggtcacagacacctcttcatgatgggagcaggactccgcactatggttcccag
acaccacagcatgaaggtagtgggacccctggaagatctggtgcctgggatccagctaat
gctaatacaccaagcaggtcacaggattttgactaccagttggatgatacagtttcacca
gcttctgatgtccacagccctgtgggtggcccctttaccccgcagacccctggaagtgct
tattctccttataacccatctcctgggtcctcatatcaagccaacagtcctggtctgggt
ggatcatcacctagtcccctggggtaccaggcctccccatcccccagcgcatatgcaggt
tacagtccgatgacccctggtgctccgttcactccacagacgccaggtacagccatggac
catgtaaatgcagactggcacacaacagaaattgaagttaggatcaaagagacccatgat
gatgctgatttaatacaccagactggagtaatcagaagtgttaccggaggtatgtgttct
gttttcttaccagaagaagataaggttgtaaatgtctcctgtgaacatctggaacctgtg
ctacctgagaaaaatgacaaggctaaagttattctaggtgaagaaagggaagcaactgga
tcattactgagtatagatggcggggaaggagtgattaagcttgatggcggtgaaaagaac
atcaaaatgttacccatcagatatctgtgtaaaatgccgagctaa
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