KEGG   Mercenaria mercenaria (northern quahog): 123539346
Entry
123539346         CDS       T07835                                 
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
mmer  Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:mmer00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mmer04121]
    123539346
   03400 DNA repair and recombination proteins [BR:mmer03400]
    123539346
Enzymes [BR:mmer01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     123539346
Ubiquitin system [BR:mmer04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    123539346
DNA repair and recombination proteins [BR:mmer03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    123539346
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX zf-RING_2 RING_XB3-XBAT31 zf-C3HC4_4 zf-RING_5 zf-rbx1 zf-Nse zf-ANAPC11 Prok-RING_4 Baculo_IE-1 zf-RING_6 zf-RING_4 zf-RING_10
Other DBs
NCBI-GeneID: 123539346
NCBI-ProteinID: XP_045179847
LinkDB
Position
1:47995918..48043790
AA seq 1333 aa
MGRGWWRNSSSWGWKKRRSWGSSFPKYNYDQDDSFIDQMLAERYRLALLERDQILGTSSQ
ASQSVVDDNDDDEMGRDDLDDEICFGSLRGNIVGLQYYSGTVNKKEMVALEREPQNRYDI
NAIKVKNVGNVQVGHIKRELAKPLAFIMDRGLARLEGVVPFGAQNMYSMPVEISLWGKPE
NQQASVDKLKKSGFYLTGGTQPATSNGSGASSSLGATDYAFAAIQPRRTYLTPAEVKNEL
DKLFENIQEGDKTSLADPAQAIATPLYPHQKQALNWMIKRENSATLPPFWQERNGRYFNT
VLNFTSNTRPESVRGGILADDMGLGKTLEMITLIVTNFVDNNPLANPVEGLVRQSKADKM
ALQKSKMLPTSSSVNTSVKRTQIKLEKVKSLSCHTEKHFLSAVISPDNIDTPALPSLPDD
EEAIEISDDDDDDEEEELAGMPTIDDKTMLRKDDPDFSPVVKKKAKKTKAKENVTPEETS
ALRPRRSVKRPARYTYSSEEDEAINDETPKKRVKENVLRKTVSNSAKGKAPLTGKKKVKK
GKPKKCLLEDEQKQEDSVENLKDNTNRHTGTEESASMLKESASSLEDPACKSEDPAPKVE
DPVSKSESAVVQTAANTGAGPADMMSVPVFNSLQPEAAEAVKKMSDRIKELEALLSSQQV
PASQPIQVGSQDLTNTSATQPSESSVPAVQAQSVVIDTVTIKQELSKTSITVTETGDHKM
KDACDDLPDLDEILCTNVDELPDIQAVTESGDTSIADCIISSETVLPSNYTKAEMRETGE
STGRAASAGPRCTLIVCPLSVLSNWLDQLDDHVHRNVHLSIYLYYGSGRTKNSNLLENQD
VVITTYSTVSADFKKGVRNPLKKVKWLRIVLDEGHAIKNPSAQQTKAILELDAQRKWVLT
GTPIQNSMKDLWSLINFLKVNPFTDKQWWRRTIERPLEKGDESALKRVQHLMGHLALRRT
KTQEVNGKPLVELPERKVYIEHVKLSEDEKKVYDSMQNEGKLIVSKYFKQGTLLHHYGDV
LAILMRLRQLCCHPFLVAKAAQAVKDTIAEIDRNGGVINDELRQKLIDTLIMVLSSGTDE
ECAICLDSLKSPVITHCAHVFCRPCIESVIKNERPNPKCPLCRGAIEDNKLLEVPPEEIQ
GESGDSNSIAADTWKSSAKVDALMNGLLKLRSEDPSVKSIVVSQFTSLLTLLEIPLRTNG
FNFVRLDGTMSTKARTRAIEEFSDPSSGSPTIFLLSLKAGGVGINLTAASRVFLIDPAWN
PASEEQCFDRCHRLGQTKDVIITKLIVEDSVEERMMELQEKKRQLMQGAFGQKQNAEQKR
QARIRDIKTLFSF
NT seq 4002 nt   +upstreamnt  +downstreamnt
atgggtcgtggatggtggagaaacagtagtagctggggctggaagaaaaggcggtcgtgg
ggttcaagctttcccaaatacaactatgaccaagatgactctttcattgatcagatgctg
gcagagcgatatcgattggcattgcttgagagggaccagatactaggaacttcatcacag
gcaagtcagtcagtggttgatgataacgatgatgatgaaatgggtcgtgatgacttggat
gacgaaatctgttttggatccctgcgtggaaatatcgtgggcttgcagtattattcagga
actgtcaacaaaaaagaaatggttgcattggagagggagccccagaatcgttatgatata
aatgctatcaaagtgaaaaatgttggcaatgtacaagtcggtcatataaaaagggagcta
gctaaaccccttgcttttattatggatagaggattggcaagacttgaaggagttgtacct
tttggagcccaaaacatgtattccatgcctgtagaaattagtctgtggggcaagccagaa
aaccaacaagcttcagttgacaagttgaagaaatctggtttttacctgactggtgggaca
cagccggcaaccagcaatggaagtggggcctcatcatcacttggagctactgattatgcc
tttgctgcaatacaaccaagacggacttacctgacacctgcagaggtaaagaatgaactg
gacaaactgtttgaaaacattcaggagggagataagacaagtctggctgatcctgcccag
gcaatagccacaccactgtacccccaccagaaacaagctttaaactggatgatcaagaga
gagaacagtgccacactgccacctttctggcaggaaagaaatggaagatacttcaatact
gtactcaatttcacgagcaacacaagaccagagagtgttagaggagggatactagcagat
gatatgggtcttggtaaaactctagaaatgatcaccttaattgtgacaaactttgtggat
aacaatccactagctaatcctgttgaaggtcttgtcaggcagtctaaagcggataaaatg
gctttacagaaatctaagatgcttccaacaagtagcagtgtgaatacatcagtgaagaga
actcagataaagctggagaaagtgaagtcactgtcttgtcatacagagaaacacttcctg
tctgctgtcatctcacctgataacattgacacaccagcattgcctagtctgcccgatgat
gaagaggctatagaaatttcagatgatgatgatgatgacgaagaggaagagttagctgga
atgcccacaattgatgataaaacaatgctcaggaaagatgacccagattttagtcctgtg
gttaaaaagaaagcaaagaaaacaaaagccaaagaaaacgtaactccggaagaaacatct
gcattgcggcctagaaggagtgtaaaaagaccagcaagatacacatatagtagtgaggaa
gatgaggcaatcaatgatgaaacaccaaagaaaagagtgaaagaaaatgttctgagaaag
acagtcagtaactcggcaaaagggaaagcaccattaactggaaaaaagaaggtgaaaaag
ggcaaaccaaagaaatgtctgcttgaagatgagcagaaacaagaggacagtgtagaaaac
ttaaaagacaatacaaataggcatacaggtacagaagaatcagcttccatgttgaaagaa
tcagcttccagtttggaagatccagcttgcaagtcagaagaccctgctcctaaagtagaa
gatccagtttccaaatccgaatctgctgttgtacagacagcagcaaatacaggtgccgga
ccagcagacatgatgagtgttccagtctttaacagtttacagcctgaagctgccgaagct
gtaaaaaagatgtctgacagaataaaagagttggaggcacttttgtccagccagcaagtc
ccagcctcacagcctatccaggtgggatctcaagatcttactaatacctcggctacacaa
ccatcagaatcttctgtcccagcggtacaagctcagtcagttgtaatagatacagttaca
atcaaacaggagttgtcaaaaaccagtattacagttactgagactggggatcataaaatg
aaagatgcatgcgatgaccttccagaccttgatgaaattctctgtacaaatgtagatgaa
ttaccagatatacaagcagtaactgagagtggagacactagcatagctgactgcattata
tcatctgaaacagttctcccgtccaactacacaaaagcagagatgcgagaaacaggggag
agcactgggcgagcagcttctgcaggacctagatgtacattgattgtctgccccttgtca
gtccttagcaattggctggaccaactggatgaccatgtgcaccgcaacgttcacttgagt
atatacctgtactacgggagtggtagaaccaagaacagtaacctgctggagaatcaggac
gttgttataacaacttactcaacagtttctgcagatttcaagaaaggtgtcaggaacccc
cttaagaaggtgaaatggttgaggattgtcctagatgaaggccatgccattaagaatcct
tctgcacagcagacaaaagccattctagaacttgatgcacagagaaagtgggtgttgaca
ggaacaccaattcagaactcaatgaaagatctatggtcattgataaacttcctgaaggta
aatccgttcacagacaagcagtggtggagacggacaatagagaggccactggagaaggga
gatgaaagtgctctcaagagagtacaacatttgatgggtcacctggctttaaggagaaca
aagacccaggaagtgaatggcaaaccattggtagagttaccagagagaaaagtttatatt
gaacatgtgaaactatctgaagatgagaaaaaggtgtatgattcaatgcagaatgaagga
aagctgatagtcagcaagtatttcaagcaaggaacattgctgcaccattatggagatgta
cttgccattctgatgagactgaggcagctctgctgtcacccgttcctagtggcaaaggcc
gcacaggctgtcaaagacaccatagctgagatagaccgtaatggtggtgtgatcaatgat
gagcttcgacagaagttgatagacacactgatcatggttctaagttcaggcacagatgag
gaatgtgctatttgtttggactccttgaaatcacctgtgataacacactgtgctcacgta
ttctgccgaccttgcatagaaagtgtgataaaaaatgaaaggccaaatccaaagtgtcca
ttatgtagaggtgcaatagaagacaacaaactgttggaggtgcctcctgaggagatacaa
ggtgaaagtggagacagcaattctatagcagctgacacgtggaaatctagtgctaaggtt
gatgctttgatgaatggattgttgaagttgaggtctgaggaccccagtgtcaagagcatt
gtcgtctctcagttcaccagcctgctgaccctgcttgagatccccctacggactaatggc
ttcaactttgtcaggcttgatggtacaatgagtactaaagctcgtacccgggccattgag
gagttttcagatccaagttccggctcgcctaccatatttctgttgtcactgaaagcagga
ggtgttggtatcaatcttactgctgcatcaagagtctttcttattgaccctgcatggaat
ccagcatcagaggagcagtgttttgacagatgtcacagacttggacagacaaaggatgta
attattacaaagcttattgttgaagactcagtggaagaaagaatgatggaactacaagaa
aagaagagacagttgatgcagggcgccttcgggcagaaacagaatgctgagcagaaacga
caggccaggatcagggacatcaaaacgctgttttccttttag

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