Mercenaria mercenaria (northern quahog): 123540040
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Entry
123540040 CDS
T07835
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03015
mRNA surveillance pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123540040
09123 Folding, sorting and degradation
03018 RNA degradation
123540040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123540040
03041 Spliceosome [BR:
mmer03041
]
123540040
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
123540040
mRNA cycle factors
Stress granule specific factors
123540040
Spliceosome [BR:
mmer03041
]
Complex C
Other components
Complex C specific factors
123540040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_Nup35
RRM_7
Nup35_RRM_2
RRM_occluded
RRM_RdRP1_2
ATP-grasp_2
Ajm-1
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
123540040
NCBI-ProteinID:
XP_053382433
LinkDB
All DBs
Position
16:complement(26461520..26477715)
Genome browser
AA seq
645 aa
AA seq
DB search
MQSAGGPQSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVN
FQQPADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT
FSAFGNILSCKIVSDEHGSRGYGFVHFETEEAARNAIEKVNGMLLNGKKVFVGRFMNRRE
RLEQMGDKMKKFNNVYIKNFSEEIDDEKLKAWFEQFGKIISAKVMTGYDGKGRGFGFVSY
EEPEAAEKAVTEMNGTESDNRTLYVGRAQKRAERQAELKDKFDRLKQERMNRYQGVNLYV
KNLDDSIDDERLRKEFSQFGTITSAKVMVEGGRSKGFGFVCFSSPEEATKAVTEMNGRII
VAKPLYVALAQRKEDRKAHLASQYMQRLASMRIQSQQMGQVFQPGGGAGYFVPTMNPGAA
RANYFAPTQIPQMRAGPRWQTVRPTGQPGGTSFQSMPGGPVRPGPRPSASANTGGGPGAQ
QQMRPSTMNARPITGQSTAQARPGMSMPQSSMQGRPQQPQAPTMPQGARPGYSQFQNNRP
QQQSQAIVVPGQDALTASMLAAAPPQEQKQMLGERLFPLIQRMYPDLAGKITGMLLEIDN
SELLHMLESTESLKAKVEEAVAVLQAHQAKEAAANQAATNAMKKE
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctgccggtggaccacagagctatcctatggcctcactatacgtgggagacctt
cacccagatgttactgaagctatgttgtttgaaaaattctcaactgccggaccggtcctg
tccatccgtgtgtgccgagacatgataaccagaagatcactaggttatgcctatgtgaac
tttcagcagccagcagatgctgaaagagctttagacacgatgaactttgataccatcaag
ggaaggccaatcagaattatgtggtctcagcgtgatccttcactccgaaagtctggtgtc
ggcaacgtcttcattaagaacctggacaagagcatcgataacaaagccttgtacgacacc
ttctcggcatttggaaacattctgtcatgtaaaattgtatccgacgagcatggttcccgt
ggttacggttttgtccactttgagacggaagaggctgcaagaaatgccattgaaaaggtt
aatggcatgttgttaaacggaaagaaagtatttgtcggtcgtttcatgaatcgccgtgaa
cgtttggaacagatgggtgacaagatgaaaaaattcaacaacgtgtacataaagaacttc
agtgaagaaattgatgatgaaaaattgaaagcctggtttgaacagtttggaaaaatcata
agcgccaaggtgatgactggttatgatggtaaaggtcgtggatttggttttgtgagctat
gaagaaccagaggctgctgagaaggctgttaccgagatgaatggaacagagtccgacaac
aggaccttgtatgtaggtcgtgctcagaaacgtgccgagagacaggcagaactgaaggac
aaatttgaccgcctgaaacaggagagaatgaaccgttaccaaggtgtaaacctatatgtg
aagaacctcgatgacagcattgacgatgaaagacttcgtaaagaattctcacagtttgga
actatcaccagcgctaaggtgatggtagagggtggaagatcaaagggatttggatttgtc
tgctttagttctccagaagaagctacgaaggccgtgacggagatgaatggtcgtatcatt
gtagccaagcctctgtatgtagctctggctcagagaaaggaagacaggaaagctcatctt
gcgtcacagtatatgcaacgtcttgcaagcatgagaatacagtctcagcagatgggtcaa
gtgttccagccaggcggaggtgctgggtacttcgtaccaacgatgaaccctggtgctgcc
agagccaattactttgctcctacccagatcccgcagatgagagccggacctcgatggcag
actgtaagacctacaggacaaccaggcggaacaagcttccagtctatgccaggtggacca
gtgagaccaggtccaagaccttcagcatcagccaacactggcggaggcccaggtgctcag
cagcaaatgaggccatccaccatgaatgccagaccaatcactggccagtctacagcccag
gctcgaccagggatgagcatgcctcagagctcgatgcaaggaagaccccagcagccacag
gccccaaccatgccccagggtgctagaccagggtacagtcagttccagaacaaccggcca
cagcagcagagccaggctattgttgtaccaggccaggatgctctaactgcctccatgttg
gcagctgctcctccccaggaacagaagcagatgttgggagaacgtctgttcccactcatc
cagcgtatgtacccagaccttgcgggtaaaattacaggcatgttgttggaaattgacaac
tccgagttgctgcacatgttggaatcaactgagtctctaaaagccaaggttgaggaagcc
gttgctgtacttcaggcccatcaagccaaggaggccgctgctaaccaggctgccaccaat
gccatgaagaaagaatag
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