Mercenaria mercenaria (northern quahog): 123540188
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Entry
123540188 CDS
T07835
Name
(RefSeq) nuclear receptor ROR-beta-like
KO
K08533
RAR-related orphan receptor beta
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmer03000
]
123540188
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
mmer03310
]
123540188
Transcription factors [BR:
mmer03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
123540188
Nuclear receptors [BR:
mmer03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
123540188
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
123540188
NCBI-ProteinID:
XP_045180934
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Position
16:18463831..18477516
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AA seq
640 aa
AA seq
DB search
MDDDLSSVIEHALQYASPLPVLEVTSTDNPSTAIQQDNSDTANILQLNNDITKNNGTDNV
DASSENSATCDTLLYGHRVTIDTTGNDGSNGGILNLLPVTLERQHDRNEIDNSVNVGQLN
IDLYATQHEPVQNVTVSINSRPVPEHTVSSSFSPSSCSLQVESPSNVIPKVKKTRKRVKN
PDPPPEPILPPCSICDEKSSGYHYGANTCEACKGFFRRTLKKKEVGYKCKCKPDMREEWE
RGPIKNGCASCRYKRCLKVGMSKEAIKIGRYTLKHKTKNINQVKNVESIDSLIDVAMASI
YESNPSSASGLELGISWPEDITSPLAAVESEISSSCRSDYDNPSPPAKKAKPDPVSSLTS
QNSIVSLKEIDSIVRTLTESQSSADFDDFGHIPTEVIKQKQTEYLEKYNMKKELFGDMGL
SKAEFDEFYSITGIDLDGRIEHVQRAFTFFEQKISVIVSFAKSIPGFKSLKMNDQANLIK
ASRIENTLFGGYRGILRNFDMERRVLTTPWGKEIHMDELARIVPIHFVLTKFKYSQSVRD
LDLTVQEESVVRAIVTTFSDRCSLEEPQKVERIQEKLVACLQHLLSIRPGGPGSRLYRIF
NLLTNFRDFSENENEFTRKMLKDWPMLSTNKYELLKEFIA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgatttgtccagtgtgatagagcatgcgttacaatacgcttctccacttccg
gttttggaagtaacatcaactgacaatcccagtacagcaatccagcaggataattcagat
acagcgaatatattgcaactaaataacgacattacaaagaataatgggacagataatgta
gatgcgagttcagaaaatagtgcaacctgtgataccttgctttacggacaccgtgtaacc
atagatactaccggtaatgacggttctaatgggggaattctcaatcttttacccgttact
ttagaaagacagcacgacagaaatgaaatcgacaattctgttaacgttggtcagttgaac
atagacttatatgcaacacaacacgaacctgttcagaatgtcactgtttcaattaattcc
cgtccggtgccggaacataccgtttccagctcatttagccccagcagctgcagcctgcaa
gttgaaagtccaagcaatgtgataccaaaagtaaaaaagacgcgcaagagagtaaagaac
ccagacccgcccccggagccgatacttccgccatgcagtatctgtgatgaaaaatcttcc
ggatatcattacggagcgaatacatgcgaagcttgcaagggtttcttcagaagaacgcta
aagaaaaaggaagttggttacaagtgcaaatgtaaaccggacatgagagaggaatgggag
cgaggcccgattaaaaatggctgcgcgtcatgcagatataaaagatgcctcaaagtagga
atgtcaaaggaagctatcaaaataggtagatacacattaaaacataagaccaaaaacatc
aaccaggtgaaaaatgtagaatccatcgacagtctaatcgatgtagccatggccagcatt
tatgaaagtaatccgtcatctgcttccggtttagagcttggaataagctggcctgaagat
atcacaagtccactggcagctgtagaatctgaaatttcctctagttgtcggtcagattac
gacaatccgtctccaccggcgaaaaaagcgaaaccagatccagtttcgagcctgaccagt
caaaacagcatagtttccttgaaggaaatcgattcaattgtgagaaccttgacggaatca
cagagtagtgcggactttgatgattttggtcacatccccacggaagtcattaaacaaaag
caaactgagtatctggaaaagtacaatatgaaaaaagaacttttcggtgacatgggactg
tccaaagccgaatttgacgagttttacagtataacgggcattgatttggatggcagaatt
gaacacgtgcaacgtgcattcacatttttcgagcaaaagatctcagttattgttagtttt
gccaagtctataccaggatttaagtcgttaaaaatgaatgatcaggctaatttaataaaa
gcttcccggattgaaaacacattattcggtggatataggggcattctcaggaattttgat
atggagaggcgggtattgactaccccctggggcaaggaaatacacatggacgagctggca
cggattgtacccatacactttgttttgacgaagtttaaatacagccagtcagttcgagac
ctggatttaacagttcaagaagaaagtgtcgttagggcgatagtgacaacattttcagat
cgatgttcacttgaagaacctcaaaaagtggaacggattcaagagaaactggtcgcgtgt
ttacaacatctactcagcatccggccaggagggcctggttcccggctttacagaatattc
aaccttttgactaatttccgtgacttttctgaaaacgagaatgaattcaccagaaaaatg
cttaaagattggccaatgttgtcaacaaataaatacgagttactaaaggaatttatcgca
taa
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