Mercenaria mercenaria (northern quahog): 123542107
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Entry
123542107 CDS
T07835
Name
(RefSeq) intermembrane lipid transfer protein VPS13A-like isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmer04131
]
123542107
Membrane trafficking [BR:
mmer04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
123542107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
WWE
UPF0154
bPH_3
Motif
Other DBs
NCBI-GeneID:
123542107
NCBI-ProteinID:
XP_053387646
LinkDB
All DBs
Position
19:25152254..25379691
Genome browser
AA seq
3252 aa
AA seq
DB search
MVFESLVTDLINKYLGDFVENLDKSQLKLGIWGGDVVLNELDLKESALDDLDLPVKIKAG
HVGNLTLKIPWKNLYSEPVIATIDGLYALAVPNVGIKYNAEKEEKEKQEAKQKKLQALEE
AKKLEAEKDKPKEKKKDSFAEKFATQVIKNLQVEVRNIHVRFEDKYTNPKQPFSIGVSLK
ELLFRTTDENWKPCIIKEAVSQIYKLVKLESLAVYWNSRTELFEDKPKTEILKSLKSALA
EENKANFQYLVKPISSVAHLKLNTKPELQEYSTPKIFLTIIFDEISVCLAKLQYNDVLEM
LEGFERVSLMGIYKKYKPSVPLKGNIRTWWHYAYTSILEETVRRRRKMWSWSHMKEHRDT
KNRYREAYIQKLESKKVSGDLQKKLDECEKYLDVFNITVIRQQAELEAAKRGAKRAEEKK
NAGWFGGWLGGGSKKKAAGKEKGDMENIQEQFYEQFNAEEKKKLYDAIGYQENEADPTLP
KEFVAVRLVTKLNNLSVMLKDDMKKEPQILKMQLKSVFASVGQRPAASAVKVDLKMDKFT
LHGTQQGDFIPRMVTSITQTEATQQALSLLDVLFETNPLDGLCDSRVRVNTRPVQIIYDA
ITVNQMAEFFKPPKDIQLKQLSQAAMSKFDEIKEQSATGLQHAIDLKKYTEIAVDLQPSY
VIVPHGGIWTKQKDVAKLVLDLGNLKIGTEKNQSDDSSEPKSPRSLEEVMLTAYDKFNIK
LDRVQLLMAHAGEDWQKARSLSDSNMHILCPISISILLQKCMFDKDPRMAKMKVRGELPL
LSLNMSDHRLQEILSLVQSIPLPESTPEEPADQFAEGPDMLPTVDVNENRIAKKVLIAEE
ESKKSPERSESMEFVNYTDLELEFVLNEISLNIAQRLKNEDVPLLRLAVNDLGTSVKVKT
YDLSAEAFLGGIHVQYLKVNAEDTDSKYVKVSDDIASQLGESLFQVTDRGPVINLVNTPR
PEGSNSKLLAVHFLKANTDGPEFATTYKKTEQSVNVEFSALELLLHQESILDLLVFAQSI
QPPKLTETEQKATETKTETEEKAKVTKKKGFSKDPEVIDMSVKAALKMFSVTVCSDEKLI
TDVRIKGIEANVTLQERQTLVGAVLKDISVRDPSPATFYPNILEIQGSEVLALNLAIYNE
NTAGDRYEDMSNVDMKVEVSLGQIKVTFLNKYVTDLLGFLDNFQEAQKKIKEAGETLAEY
SQDAVQNLQETASRLSLSVDMRAPIIYMPQNSTSYNILMVDLGHLSVKNAFEKPGQRSAN
GVPAVLDKMNVTLTDLKVSRAVVDASQYVKSEVELLQPAEISVDICRNIASSWFHAVPDV
DISGKLKAIKLLISQGDFTAMMLVLNENLSEGQDKTKAVKDQPSEAEAVTKDVEAPVTAE
TAVATQSTPQAKQSEETWCKLKFNFCINSLSAALYNGDSQLTSGLYHHDDSKCLGQFELQ
LMGLDGHMMSSGDMDVKVILRDTIMDDKRLQKRGGITRMMERSKKSTSDRKEANMIDVSF
KQEKNDKNIDVHMSSLYVCVCLDFLMSIADFFVKGLPKQPEVEPPPVQTKETQKADVQPK
PEEPPAGEMSISVCIDRPEIIMIEDQSKEDTSALMLDMELMFRMRQSPETMDMSAAIKNL
GIVSCKYNSRGSGAQILTPCDISFYSKTPKDQGAHMDVSTSDLILNISPATIKTMSAIAA
GLSKQDEEGVEEEKMPGDIWQIKKLQDCDFWFLRTDDEDNALASEPLDLGATVDEVLEER
GEQLCKEKMIVKVPSVVVKIEGGVGNRTVPLLITEMSFQGEVRDWSGKLYVESRLLLEVA
YYNEKMSVWEPLLEPVFSEGKYRRWELGLEVMKNDDIELGPEDDEETDNVKLPPPKMTIN
VKSTDPLQLTMTKACLESLTNLGKAFGDAYALVEPTLKAGEVMTPYVIRNVTGEDLMLKL
DNAFEIPPEASNGKIKLLFGDALPLKNKDGPKLRKQASVIKASHASDEKKMIFQVEKFNA
TREVTVKRAEKRLFHVDTKGGEQWAIVCDTQTSLGQRTVTFRSSVQVMNHLTVPVDVFFK
DPSSGSMPVSSVSPEEIFSLPLHTIYTTSGQFMFKPIKEGCDELSDPVSWKGAENLGLKQ
LMCKASAGQQPFYFKVRAQIESVYYEGGDTLAAKSTTFHLYPTVVMHNLLPYKIRVMLEG
TADAFELDRGCSIPLDHACVGKTNIEITIPDYQNMEWVGRRLLEVDIPELSVWTFEAYDK
SKKITMDLGLHYKQGPGVLDVSVYSPYWMINKTDMLLKYKAGDDDQVDHAPDLKDVMMFS
FKKNSLFSKKKDDTLDRKKDTSDRKKDTLERKKDAGKKQKVKEMKQSGKASLKIGEGDWS
DKFSLDVVGSSGTVQSKNKTRTWEVGVSILLSNSGLTKIVTFTPYYMLVNTSPYPLLCKE
NHGDSQWIEIPSKECVPIWPLQTGKEITMQTKVKDTEISTSHFLFNKPHTTLLKLDNEYG
GINVECQETESSVVTTLTNYKAGMATVLIINHTDKCDISYQQNGGGKPVHVMGPSMAGLY
TWEDSLGKREMVWSCGEKKDVKNDLSQDGIGEVFYNSDTKVYWVSFLNGMQRVLLFTHDL
ALATIAQELYKKSQAGELERIEQEINLNIHGMGLSLVNNYKQQEVAFLGITSSGIIWEEK
RKRYKAFNLKNCQALEGAYQKYETEKLGGHTPPDQVRIDKMEVNFKEMMMFKPNKRMIRR
SFQDGIWVQYKTSPHQVQFHAKINRVQLDNQVTGSVFPTVLSPMPPPKSVAAESVPKPFT
EISMMLRKHEHSNLSQMKYFKVLIQEMQVKVDQGFLNNVLDLFSSDQEPSRDQEKQMLED
DIERTEKDLITTMGVSLASEQKMFYDYLHLSPIKVHLSFSLQGGGGGDGKPTQLHSNVIN
VFLQSVGVVLTDVQDVVFKLGFFERQHTFYNNKMLIGEMTTHYAGQAIKQMYVLVLGLDV
LGNPFGLLRGMAEGLEDLFYEPYQGAIQGPEEFAEGLALGVRSLFGHAVGGAAGAVSRIT
GTLGKGLAALTLDDEYQKKRREAMNKRPANVGEGFARGGKGLVMGVFDGVTGIVRKPIEG
AKKEGVEGFFKGVGKGLVGVVTRPTSGVVDFASSSFEGIKRIAENVGEIHRLRPPRRFHK
DHVIRPYNEAEAAGFAILMETEKGKYFKTDDYVAHTVVTKDQKNVFLVTNKRVIFASRGE
IFGQWNCEFTYMWSELKEKPKATAKGFELVLKEKEKKFLFGGSSSKKEIHIQDKKTVEYI
IGKISEAWDAAK
NT seq
9759 nt
NT seq
+upstream
nt +downstream
nt
atggttttcgaatcgctggttactgatttgatcaacaaatatttgggagactttgtggag
aacttggacaaatctcagttgaaacttgggatatggggaggtgatgtggttttgaatgaa
ctcgatttgaaggaaagtgctttggatgaccttgaccttccagtgaaaatcaaagcaggt
catgttggaaatttgaccttgaaaataccatggaagaatttgtactcagaaccagtgatt
gcaacaatagatggtttatatgcccttgctgtaccaaatgttggtattaagtacaatgca
gaaaaggaagagaaagaaaaacaggaagctaaacagaagaaattacaggcccttgaggaa
gcaaaaaaacttgaggcagaaaaagacaaaccaaaagagaagaaaaaagactcatttgca
gaaaagtttgcaactcaggtcatcaaaaatctacaagtggaagtgcgaaatatccatgtg
cgcttcgaagataaatacacaaatccaaaacaaccgttctctattggcgttagtttaaag
gaacttctttttagaacgacagatgagaactggaagccatgtataataaaagaggctgtt
tcacagatatacaagcttgtgaaactggagtcactggcagtatactggaacagcagaaca
gaattgtttgaagataaaccaaagacagaaatcctgaaaagcctgaagagtgcactagca
gaggaaaacaaagccaactttcagtacttggtcaaaccaatttcatcagttgctcatctc
aaattgaacacgaagccggagcttcaagaatacagcacaccaaagatttttctcactatt
atctttgatgaaatatccgtctgcctggcaaaactacaatacaatgatgtattggagatg
ctggaaggttttgagagagtaagtctgatgggaatctataagaaatacaaacccagtgtg
cctttgaaaggaaacatcaggacatggtggcattacgcatataccagtatattagaagag
actgtaagacgaagaagaaaaatgtggtcatggtcacacatgaaggaacacagggataca
aagaacagatacagagaggcttacatccagaaactagaaagtaaaaaagtgtccggcgat
ctgcaaaagaaattagatgagtgtgaaaaataccttgatgtgttcaatatcactgtgatt
cgtcaacaagccgaactggaggcagccaaacgtggagcaaaacgtgcggaggagaagaaa
aatgcaggctggtttggtggatggcttggaggcgggtcaaagaagaaggctgctggaaag
gagaaaggcgacatggaaaatatacaggagcagttctatgaacagtttaatgcagaagaa
aagaagaaactgtatgatgccattggttaccaggagaatgaggctgatcctactcttcca
aaggagtttgtggcagtgagattggtaacaaagttgaacaatctctcagtgatgctcaaa
gatgacatgaaaaaggaaccacagatcttgaagatgcagctaaagagtgtgtttgcttca
gtgggccagagaccagcagccagtgcagtgaaggtggatttaaagatggataagttcaca
ttacacggtacacagcagggagactttatacccagaatggtcacatccatcacacagact
gaagccactcaacaggcattgtcactgctagatgtgctatttgaaaccaatcctctggat
ggactgtgtgattctagagtgagagtaaacacacgacctgtacagattatctatgatgct
attactgttaaccagatggcagaatttttcaagcctccaaaagatatccagctgaaacaa
ttatcccaagctgcaatgtcaaagtttgatgaaattaaggaacaatctgccacagggttg
cagcatgctatagacttgaagaaatacacagaaatagctgtagatttacaaccatcatat
gttattgtacctcatggaggaatatggacaaaacagaaagatgtagctaagttagttctc
gaccttggtaatttaaaaataggaacagaaaagaaccaatcagatgatagtagtgagccg
aaaagtccacgttcactggaagaagtgatgttgacggcgtatgataaatttaacatcaag
ttggatagagtacagttactgatggctcatgcaggtgaagattggcagaaggcacggtcc
ttgtccgactccaacatgcacatcttgtgtcctatctctatctcaatactgctgcagaaa
tgtatgtttgataaagatccacgcatggcaaagatgaaagttagaggcgaactaccattg
ctaagtttgaacatgtcagaccatcgactacaggaaatcctgtcactggtacagagtatt
ccactccctgagagcactcccgaggaacctgccgaccagtttgctgagggtccagatatg
ttacccacagtggatgtaaacgagaacaggatagcaaagaaagtactgattgcagaggag
gaaagtaagaaatcacccgagcgcagcgaatccatggagtttgtaaactatactgatctt
gaactggaatttgttcttaatgagattagtttaaacatagcacagagattaaagaatgag
gatgtacccttgcttagacttgctgttaatgaccttggtactagtgtcaaggtcaagacg
tatgacctttcagctgaagctttccttggaggaatacatgtgcaatacctgaaagttaat
gctgaggacacagacagcaaatatgtgaaagtttctgatgacattgcctcacaactgggt
gaaagtttattccaagtgacagatcgaggccctgtgattaacctagtcaacacacccaga
cctgaaggaagcaattcaaaattgcttgctgttcattttctaaaggccaacacagatggt
ccagagtttgccactacatacaagaaaacagaacagtctgtgaatgtagagttctctgcc
cttgaactactgttacatcaggagtctatattagacctactggtgtttgctcagtcaatc
cagccaccaaaactgacagaaactgaacagaaggcaacagagacaaaaactgagacagag
gaaaaggccaaggttacaaagaaaaaggggtttagcaaagatcctgaagtgattgacatg
tcagtgaaggctgccctcaagatgttttccgtcacagtctgctctgacgagaaattgatt
actgatgtgagaattaaaggtatagaagcaaatgtgactcttcaggaaagacaaacttta
gtgggagcagtgcttaaagatatatctgtgagagatccaagccccgcaacattctatcca
aatatactagaaatccagggcagtgaagttttggccctaaatctggctatttacaatgaa
aacacagcaggggatcgctatgaagatatgagtaatgttgatatgaaagtggaagtttct
ctaggtcagatcaaggtcacattcctcaacaaatatgtcactgatttactgggttttctt
gacaatttccaagaagcacagaagaagataaaagaagctggtgaaaccttggcagaatat
tcccaggatgctgtgcagaatttacaagaaacagcttcaagattgtctctttctgttgac
atgagagccccaataatatacatgccccagaattcaacatcatacaatattttgatggtt
gatctaggtcatttgtcagtaaaaaatgcctttgagaagcctggccagagatcagctaat
ggagtaccagctgtattagataaaatgaatgtgaccttgaccgatttaaaagtttcaagg
gcagttgtggatgcctcacagtatgtaaaatcagaagtggaattactacagcctgcagaa
atatctgtagatatttgtcgaaacattgcttcaagctggttccatgcagttccagatgtt
gatatttctggaaaactgaaagcaatcaagctgttgatcagtcaaggagatttcacagca
atgatgttagtattgaatgaaaatctgtctgaagggcaggataaaaccaaggcagtgaaa
gaccagccgtctgaagcagaagctgttactaaagacgtcgaggcacctgttactgctgaa
actgctgtggccacacagagcacaccacaagcaaaacagagtgaggaaacctggtgtaaa
ctcaagtttaacttctgtattaacagtctgtctgcagcactatataatggagatagtcag
ctgacgtctggcttgtatcaccatgatgacagtaagtgccttggacagtttgaactgcag
ctgatgggactagatggtcacatgatgtccagtggtgacatggatgtcaaggtcatattg
agagataccatcatggatgataaacgtctgcagaaacgtggcggaataacaagaatgatg
gagagaagtaagaagtctacatcagataggaaagaggcaaacatgattgatgtctccttt
aaacaggagaaaaatgataagaacattgatgtgcacatgagtagtttatatgtatgtgta
tgcctggatttcctgatgtcaatagcggacttctttgtcaaaggcctgccaaaacaacct
gaagtagaaccgccccctgttcagaccaaggagactcagaaagcagatgtacagccaaaa
cctgaagaacctccggccggtgagatgagtatatctgtgtgtatagacaggccagagata
atcatgatagaagaccagtcaaaggaagacactagtgccttgatgttagatatggagctg
atgtttagaatgaggcagagcccggagactatggatatgtcagcagccatcaaaaatctt
ggcattgtctcctgtaaatataacagtaggggttccggggcacagattcttacaccatgt
gacatatcgttctacagtaagacccctaaagatcagggagcacatatggacgtttctaca
tcagatttaattctgaatatatcaccagcaactatcaagactatgtccgcaatagctgca
ggactgtccaaacaagatgaggaaggagttgaagaggaaaagatgcctggggatatctgg
cagattaagaagttacaggattgtgatttttggttcctcagaactgatgatgaagacaat
gcattggcttcggaaccattggaccttggtgcaactgttgatgaagttctggaagaaaga
ggggaacagttgtgtaaagagaagatgattgtaaaagttccgtcagttgttgtcaagatt
gaagggggcgtaggaaacaggactgtcccactactgatcacagagatgtcattccaaggg
gaggtcagggattggtcaggaaagttgtatgttgaaagcagactgctactagaagttgct
tattacaatgagaaaatgtctgtttgggaaccacttctagaaccagtctttagtgaggga
aagtacaggagatgggagcttggacttgaggtgatgaagaatgatgatattgaacttggt
cctgaagatgatgaggaaactgacaatgtaaagttgcccccacccaagatgaccataaat
gttaaatcaacagatcccttacagctgaccatgactaaagcttgcttggagagtttaacc
aatcttggaaaggcctttggtgatgcatatgcattggtagagcctacattgaaggctggg
gaggttatgacaccgtatgttatacgtaatgtcactggagaggacctgatgcttaaactt
gacaatgcctttgagattccaccagaagcatcaaatggaaaaataaaattgctttttggg
gacgctttaccactgaagaacaaagacggccccaaacttcgcaagcaggcatcagtgatc
aaagcatcacatgcttctgatgaaaagaaaatgatcttccaagttgagaaattcaatgcc
acaagggaggtaaccgtcaagcgggcagagaaacgtttgttccatgttgatacaaagggc
ggagaacagtgggcaatagtttgtgatacacagacatcactgggacagagaactgtgaca
tttaggtcatctgttcaggtgatgaaccatctgacagtaccggtggatgttttctttaaa
gacccgtcctctggaagtatgcctgtatcatcagttagtcccgaggagatattcagctta
ccattacatacaatatacaccacatccggacagttcatgtttaaacccattaaagaagga
tgtgatgagttaagcgaccctgtcagttggaaaggtgcagagaatcttggactgaaacag
ttgatgtgtaaggccagtgccgggcaacagccattttacttcaaggtcagggcacagatt
gagtcagtgtattatgaaggaggagacacattggctgcaaagtcaacaacctttcacctt
tatcctactgttgtcatgcataacctcttaccttacaagatcagagtcatgctagagggc
acagctgatgcctttgagttagatagaggatgcagtataccattggatcacgcctgtgtg
ggcaaaaccaacattgaaataacaataccagattatcagaatatggagtgggtagggcgc
cgtttattggaggtggatataccagagctttcagtctggacgtttgaagcatatgacaaa
agcaagaaaattacaatggacttaggtcttcactataaacaagggcctggtgttctagat
gtgtccgtgtatagtccctactggatgatcaacaaaactgacatgttactcaaatacaag
gctggagatgatgaccaagtggatcatgcgcctgatctcaaggatgttatgatgttctca
ttcaagaagaattcactgttttctaagaaaaaggatgacactttggatagaaagaaggac
acatcagatagaaagaaggataccctggagagaaagaaggatgcaggaaagaaacagaaa
gttaaagaaatgaagcaaagtggaaaagcttctctgaagatcggagaaggtgattggtca
gacaagttctctcttgatgtagttggcagttcaggaactgtacagagcaagaataaaacc
aggacctgggaggtcggagttagcatactgttgtcaaactctggtctcaccaagattgtt
acatttacaccatactacatgctggtgaatacatctccctacccgttgttatgtaaagag
aaccatggagatagccagtggattgaaataccatcaaaagagtgtgttcctatatggcct
ctacagacaggcaaagaaattacaatgcagacaaaggtgaaggacactgagatatcaact
agtcatttcctgttcaacaaaccacataccacactgctcaaacttgataatgagtatgga
ggaataaatgttgaatgtcaggagacagaatcctctgtagtaacgaccttgaccaattac
aaggctggcatggcaactgtccttattatcaaccatacagacaagtgtgatatttcttac
cagcagaatggtgggggtaaaccagtgcatgtaatgggaccgtcaatggcaggattgtat
acatgggaagattctctagggaagagagagatggtgtggtcttgtggagagaagaaggat
gtgaaaaatgatctctcacaggatggtataggggaagtgttctacaattcagacacaaaa
gtttactgggtgtctttcctgaatggtatgcagagagttctactgttcacacatgatctc
gccttggcaaccattgctcaggagttgtataaaaaatcccaggcaggagagttggagagg
atagagcaagagatcaacttgaatattcatggaatggggctgtccttggtgaataattat
aaacaacaggaggtggctttccttggaattacaagctcaggcataatctgggaggaaaag
aggaagcgctataaagcattcaacctgaagaactgtcaagccctggaaggtgcttatcag
aaatatgaaacagagaaattaggagggcatacaccaccggatcaagtacgcattgacaag
atggaggtgaattttaaagaaatgatgatgtttaaaccgaataagcgaatgattcgacga
agtttccaggatggaatctgggttcagtacaagacatcgcctcatcaagtccagtttcat
gctaaaataaacagagtacagttggataaccaggtgacaggatcggtgttccctacagtg
ttatctcccatgcctcctcctaaatcagtcgctgctgaaagtgttccgaagccgttcact
gagatcagtatgatgttaagaaagcatgaacacagtaacctatcacaaatgaaatatttt
aaggtgctaatacaagagatgcaggttaaggtggatcagggtttcctcaacaatgttcta
gacttgttcagttctgaccaagaaccttctagagatcaagagaaacaaatgttagaggac
gatatagagagaacagagaaagacctgatcacaacaatgggagtgtctcttgccagtgaa
cagaaaatgttctacgactacctacatctctcacctataaaggttcatctcagcttttct
ctacaaggtggtggaggtggtgatgggaaacctacacagttacactccaatgtgataaat
gtgttcttgcagtcagtgggtgttgtactgacagacgtgcaggatgttgtcttcaagttg
ggtttctttgaaagacaacatacattctacaacaataaaatgttgattggagaaatgacc
actcattatgctggtcaggcaataaaacagatgtatgtgttagtacttggactagatgtt
ttaggaaatccgtttggactgttacgaggtatggcagagggcctggaagatctcttctat
gaaccataccagggtgccattcaaggtcctgaagagtttgcagaaggtctagcgttgggg
gtcagaagcttgtttggacatgctgttggtggcgctgcaggagctgtttcccggatcaca
ggaacccttggtaaaggtcttgcagccctgacattagatgatgagtaccaaaagaagaga
agagaagcaatgaataaaagaccagcaaatgttggtgaaggtttcgctagagggggaaaa
ggtcttgtcatgggtgtgtttgatggcgttactggaattgttagaaagccaatagaagga
gcaaagaaagaaggtgttgagggattctttaagggtgttggaaaggggctggttggcgtg
gtaacaaggcctacaagtggagttgttgactttgccagtagctcatttgaaggaatcaaa
aggatagcagaaaatgttggagaaattcatcgtttacgtccaccacggaggttccataaa
gatcatgtgatcagaccttacaatgaggccgaggctgcgggttttgcaatattaatggaa
acggagaaaggcaaatacttcaagacagatgactatgtagctcatactgtagtgactaaa
gatcagaaaaatgtcttcttggttacaaacaagagagtaatatttgcaagtcgtggagaa
atttttggccaatggaattgtgagtttacgtacatgtggtctgaactgaaagaaaaacca
aaggcaacagctaaaggttttgagcttgtcctaaaggagaaagagaagaaatttctgttt
ggaggatctagctcaaagaaagagatccatatacaagataagaaaactgtcgagtatata
atagggaagatatcagaagcttgggacgctgccaaataa
DBGET
integrated database retrieval system
