Mercenaria mercenaria (northern quahog): 123543409
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Entry
123543409 CDS
T07835
Name
(RefSeq) general transcription factor IIF subunit 1-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123543409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123543409
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
123543409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
DUF3874
RecX_HTH1
Motif
Other DBs
NCBI-GeneID:
123543409
NCBI-ProteinID:
XP_053395562
LinkDB
All DBs
Position
3:103859806..103890368
Genome browser
AA seq
546 aa
AA seq
DB search
MATKPQSVAGAGAAKPGAASASSQSTTQEYVVRVSNNTSKKHSMIKFSTGTEVDFLKLTN
TTVRMERENNLREYKTAHNLDMMPKFGAGSEYGREQKEEARRKKFGINIKKYNPDAQPWL
MKVGKGKDAKRFKGVREGTITQNTSYYIFTQSPDGAFDAFPIEEWYNFQPVVQYKYLNSE
EAEEEFLKRDKRMNMFSIMKRIKKDDDTADPDADEKKVKKKKDRSLILTDMEEWGFDEDD
DDDDDDDDDEEGEKKPKKKEKKDTKKKGRKVAKLNDNDEAVEDSDEGDFDDRELDYISDS
GSESELDEKEKDAKYDTQGVDQERGLKKLIDSEEESSEEEGENKEEEENEEGEADEGGGE
GGGGGKEKKVKKEKKEKSKDGGDDSDSSSSSSDSEDSDIDKNEDKFSSVLFMQKRKGGSR
SNTPTFDKSADSKVDVKTEVKSDGVKRKMEGEDTTDSQKKPRTESPVVPSASSASLSSGE
ITEEAIRRYLSRKPMTAKELVQKFKSKKPQMSKDQMTQRIGQLLKKINPERKYVNNVLYL
SLKKSD
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaacctcagtctgtggcaggagctggagctgcaaaacctggcgcagcatct
gcaagcagtcagtccacaactcaggaatatgttgtgagagtttcaaacaacacttccaag
aagcacagtatgatcaagttctccactggaactgaagttgacttcctcaaactcacaaat
actactgtgagaatggaaagggaaaacaatttgagagaatataaaactgcccataattta
gacatgatgccgaaatttggtgctggaagtgagtatggccgtgaacagaaggaggaggct
agaagaaaaaagtttggaataaatatcaagaaatataatcctgatgcacagccatggcta
atgaaagttggaaaaggcaaagatgctaaaagatttaaaggtgtgagggaaggaacgatc
acacagaatacatcatattatatattcacacaaagtccagatggagcattcgatgccttc
cctatagaagaatggtacaacttccaacctgtagttcagtataaatatctcaactcggag
gaggcagaggaggaatttctaaagcgggacaagaggatgaacatgttttccattatgaag
aggataaagaaagacgatgataccgcagatcctgatgctgatgagaagaaagtcaagaaa
aagaaagataggagtttgatattgactgacatggaggaatggggtttcgatgaagatgat
gatgacgatgatgatgatgatgacgacgaagagggagagaaaaagccaaagaagaaagaa
aaaaaagatacaaagaagaaaggaaggaaggttgcaaaactaaatgacaatgacgaggct
gtagaagatagtgacgagggagattttgatgacagagaactagattatatttcagattct
ggaagtgaatcagaactagatgagaaagagaaagatgccaagtacgatacacagggtgta
gatcaggaacgtggactgaagaaactgatcgactcagaggaagagagcagcgaggaggag
ggagaaaataaagaagaagaggagaacgaggagggagaggctgacgagggagggggagag
ggaggtggtggcggcaaagagaaaaaagtgaagaaagaaaagaaggagaaaagtaaagat
ggtggagatgacagtgacagtagcagttcctcctcggacagcgaggactcggatatagac
aagaatgaggataagttctcatctgttctctttatgcaaaaaaggaaaggtggatcaaga
tctaacactccaacatttgacaaatcagctgatagtaaggtagatgtcaagacagaggtc
aaatcagatggtgtaaagaggaagatggagggtgaagatacgacagactcacagaagaaa
cctagaactgaatctcccgttgtgccgtctgcttccagcgcatcattgtctagtggtgag
ataacggaggaagctatcagacggtatctgtctcgtaaacccatgacagctaaagaactt
gtacagaaattcaaatcaaagaaaccgcagatgtcgaaagatcagatgactcaacgtatt
ggacagttattgaagaaaatcaatccggagagaaaatatgtgaacaatgtgttgtattta
tctttaaagaaatcagattga
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