Mercenaria mercenaria (northern quahog): 123546980
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Entry
123546980 CDS
T07835
Name
(RefSeq) uncharacterized protein LOC123546980
KO
K09271
transcription factor SOX15/30
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmer03000
]
123546980
Transcription factors [BR:
mmer03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
123546980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
MATalpha_HMGbox
Motif
Other DBs
NCBI-GeneID:
123546980
NCBI-ProteinID:
XP_053407277
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Position
9:41197128..41211641
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AA seq
535 aa
AA seq
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MDTVTLTNDTILQQNESIKLVVKSGEGTVPVYSKEASTCTDKSFKVSNEGLHHGNQVNHP
RQLSVRTTPIDICGQGDTRTLIQIHPYLTEKTTQLPGSQDSVQGAFDTTTSNSILVPYIA
NVAKEHDVLEEMKRRLAQSFVKQQNLQRVQQDVNDPKSSFVPGTDIEYRTPGAHYKNKNG
KIKRPMNAFMVWARDYRGYLASSMPNATNSEISVKLGQIWASMPPEEKKQYYDVAEKIKA
KHRQDYPDWVYQPSVPTLKKKDDTVIYTRTPTPPLNFTFGRLGQTESAHISGDEISGLES
ENALQGTLSGATSKNVGSKFCLNQSQHNNGTTFQDIQQKPQDDINSSVNTVTDMCHIRPL
YVTRVSYQSALEIPKENTVSDTTRGLLANKISQGRAENVNVTGPDRRYYQQRAPFIKRPN
IPITPIHQTSLSQKIAGTIKSPLPILKVPSTPRIMGIVAPPLHGMDNVRFHAVRPSLLNE
LKPNVQPVSPKLLLDTQQQRPQMIPLTTKLTPNGTLPVHRQQGINEQLKVVYASL
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggatacagttacactaacaaatgacactatattacaacagaatgaatccattaaactt
gttgttaaaagtggagaaggaacagttcctgtgtattccaaggaagcttcgacatgtact
gacaagtccttcaaagtgagtaatgaaggtttgcaccatggaaatcaggttaatcatccg
cgccagctttccgttagaacgacacccattgatatttgcggtcaaggtgacacgagaacc
ctaattcaaattcatccttacttaacagaaaagacaacacaattaccaggaagtcaagac
agtgtccaaggtgcgtttgacaccaccacttccaatagtatacttgttccatacattgct
aatgttgctaaagaacatgatgtgctggaggagatgaaaagaagattggcacagtcattc
gtgaaacaacaaaacctacaacgtgttcaacaagacgtaaatgatccaaaatcatcattt
gtaccaggtacagatattgaataccgcacacccggtgcccattacaagaacaaaaatggt
aaaatcaagcgtccgatgaacgcattcatggtatgggcacgtgactatcgtggttatcta
gcctcttcgatgccaaatgccactaactcggaaataagtgtcaagctcggtcagatatgg
gcaagcatgccaccagaagaaaagaaacagtattatgacgttgctgaaaaaataaaagct
aaacatagacaggattatccggattgggtatatcagcctagtgtaccgacactgaaaaaa
aaagatgatactgtcatctacacacggacgccgacgccgccgttgaattttacttttggc
agattaggtcagacagagtccgcacacatatccggcgacgagatttccggtctggaatca
gaaaatgccttgcaagggacgttaagcggtgcaacatcgaaaaatgttggaagtaaattt
tgtttgaatcagtcgcaacacaacaatggtactactttccaagatatacaacaaaaacct
caagacgacataaatagttccgtcaatactgtcacagacatgtgtcacatacgaccgtta
tatgtgacacgtgtttcctaccaatccgcgcttgaaatacccaaggaaaatacagtttct
gatacaacaagaggtcttcttgcaaataaaatatcacaggggcgagcagaaaacgtcaat
gtaacaggtcccgatcgacgatattatcaacagagagcacctttcataaagcggccgaat
attccaataacgccgatacatcaaactagtctgtcgcagaaaatagccggaaccatcaaa
tctccccttcctatattaaaagtgccatcaacgccgagaataatgggtattgtggcacca
cctcttcatggaatggataatgtgagatttcacgcagtacgcccttccttgctgaatgaa
ttaaaacccaatgtacaaccagtgtcgcccaaactgttactagatacacaacaacaaaga
ccgcagatgataccgttaacaactaaactgactccgaatgggacattgcctgtccacaga
caacaaggtattaatgagcaattaaaagttgtatatgcaagtttatga
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