Mercenaria mercenaria (northern quahog): 123547094
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Entry
123547094 CDS
T07835
Name
(RefSeq) huntingtin-like isoform X1
KO
K04533
huntingtin
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123547094
04131 Membrane trafficking [BR:
mmer04131
]
123547094
03029 Mitochondrial biogenesis [BR:
mmer03029
]
123547094
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123547094
Membrane trafficking [BR:
mmer04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
123547094
Mitochondrial biogenesis [BR:
mmer03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
123547094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_N-HEAT
Htt_C-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
Motif
Other DBs
NCBI-GeneID:
123547094
NCBI-ProteinID:
XP_053407183
LinkDB
All DBs
Position
9:complement(36220692..36311423)
Genome browser
AA seq
2834 aa
AA seq
DB search
MIKICPALMVFATDTEVKVLIKAFLPNLKSNLASCRRAAAMCLTLICQYSRNPPTFIEFL
LVSLLELVLPVERDIEGPVLVGVIMCLRNLIPLLSEHSLEAQGMKGSFGETKPLKTETVS
TEQIITVYQLLVHHLSHVDHNVVNSCLEALQQLLRTPPTSLKTVLTSDGGISETFIYKKD
MKTHSNVLADVPSTSQLSVASEDTGLDEESESCDIKSQSGVSDTASSAYSSEMDQSETKL
QEISSADSETVKENLENAELESDLGVVINCDEPEEYSNVEIGDLQEDKSEQSGLSNINTG
SQETLLSIKSLSPTHKIEGRLEIIGQDMNGNPEIVEPEFCELVSPMPTESDVNILDKIGS
ETEGVPLVYCMRVICGRFLLSGKPGELMPDRRVRVSVKSLALGNVAYAVRLAPSLFLQKL
QKTSGHGSEESAIIRDILLYASHPDPQLKGTCSIIIGNLVSAVLTEGRGDFDKWVKLNNE
NTGNLCLSSLVDTLLFIAEDSSSVAARLAVSALGTCLPKLLHSNHGNLAIKALLKLLQVK
NNSYWLVKVEVMEFVRSLDFKVMKHLENTCSAKFGQKQFLGPLSLQDHILEEVVLVYIGD
EDGRVRKAAAHTLVRLVKQLFYPVDFPHQDPVIAVARNNIDNFLFPTMHDWCQQPPPPVQ
GLVRPYHVAPRLVVQSTMESVLSRLVLSLMEKLNMAKSKYLIAGCCQALSMLSEVYETSC
YPHAWGCAVPVPLLPKETTSKYRRPPTRSLSGSSTFSLDELTSSTGGGPLPLILSLLTSS
AVTFDLSTHQMVLQLAGNLVAGSAYRCLKNQDVDHQKSDSQSEEGAWSALSNRLLVPLID
HLLTHVARILNAFAHVIDEQQPGPPQMKTALPSLPTAPSLSPIKRKAKGEKEAGSAPNTQ
NQDVKNTPKPTQKEKDKEAEKERSKKDGLGTFYTVPHYVKFYEVLKGAYSNYKISLDLSV
TDKFCAMLKTSLYVFSQILEVATLSDIGKYAEEFLNYLKSTISLEPTDTVLCVQQLLKAL
FGTNLCSQWEEHQVQNQPRKPGKATRLSGNKDGLYQCTFTQPYSQFTQALAAAAIKAVSP
DYEDTTGVLTWLKKCVERKVPAILKPSSKADKTAIAAYIRLFEPLVIKALKQYTVTSSLP
LQQQVLDLLSQLVQLRVNYCLLDSDQVFIGFVIKQFEYIEEGQIRRSNTLVPNIFNFLVM
LSYEKFHSKPVITMPKIIQLCDGIMASGLDPTSHAIPALQPIVHDLFLLRGASKSDISKE
LETQREVIVSMLLRLIQYHQAIEMFVIVLQQCHRESEERWKRLSRQVTDTVLPALAKQQI
DLNSQVALDVVHRLFESVAPIVFRPVDILLKTLLMKPANISTCKGLVRWMCLVLSVLRVL
MAQTKEEVVLSRIHELGLKLHVFQTGESEITERERGVVDSLSPEEIMARLFLQIIGHCIA
MINEVALQSGSGDTLCNFLSQQLSHLLMYITHMFQSGSFRRVATASVQQIKQRSLACYYD
IKAINHDFLLLGVTQPTLTLQWCNVLILMNFSDQSFWSDVVKTPKKYIMASSSSSAEEKS
PEETDVQSPRAQRCCNDEILRRGGLILFCDYACENLNDSEHMTWVLINHVRDLIELSEEA
PVQDFIGAIHRNSAASSLFIQAIHARWEDVTRPSLVRKTLKCLDAIHFSQSGALLTLLID
KFLSTHHLAVARACDNIACRRVEMLLAESPQERAQQLPLEDLDKLLIFMKKNKLIAKHAR
LLSLLGKFRESIADDTKSPIPAEVSHSLKLPPFIGDLQLEKDGYMSIVREQCYAQNGSSR
ECASLLQHLDYADMLSVMMTKEFNLNIMEECISIGTQRTLQKYSRESDIPSTGNHSNEWM
LDPLFQASQLTLMRHINNIVNMLPVPHEIMNFYEAKDGHISKYLEKLEDFFTDSSSVDIV
FTLTSSLLQYLVSISVFPWKPKVPTESQNDVCRFCTFCLECVSWLLCSNNMPTAEQLSIS
LQCVRTVLQNPQLCSLIGQTNHVTWVCSISKTVHQIVSALCVLPGQQMCVHVRHEDTPTN
SHKDDLHYLTQACDEVSELVQYVLTQSSLSGMNHGTTVLPNNLSSLISSVVIGLSRTPVL
NSFARTPPIVWKMGWIPTPSGEPKTKLPPLPIDLMLDKEVLREFVHRISIIGWISRQQFE
ETWMCLLGVLNPVSPEQHFSPEEEVERTHCMVYAVRAITNMLVQTMIVPSPGNPTQGQFD
VQPRDKPLAFLHTRCGKKLTVIRGVVEHEVLRFSANNRRNTGPSTDSVKYMFDSNLERDT
SIDDFTLGQVSVESIWSVVGVLEPNMSDMSDTTDSIDSPTHQDTPLSNLATSPSETTITR
DPSLSAGGLDVHSCLQFLLDLYRQWLIPNSNNKPPLMLLNEVIKSVVCLSDLFAEREQFD
WMLDTMFEVYKAHPGEDEISLQYLTVGICKAAAVVGVLMNHQAPDNTSSDRLIKIIENGL
RSTHIPSKVSALHGVLYLLEAGIPEVSKPLVPVITEFLLKTLTSVSQQAVFSQKYLLTMW
ATAFYILENYNIDVKDTDFPSQILQLAISMASSSEEGVSTTVYLAILKGLERLLLTDVLT
SQDAEVIVKLSVDRLCLPSPQRSLAALGLLFTCMYSGKQYEGYSPRPREHEAFNMEEPSS
LLQDPESLILAMERVTVLFDRIKKGYPYEARVIGRVLPAFLADFFPAQDIMNKVIGEFLS
SQQPYPQLIAKVVFQVFSNLHDQRQHGLLRDWVMLSLSNFTQRTPVSMAMWSLTCFFISA
STNPWLRNLLSYVLTRMGKIELIDKHLFCLAALEFFTQLTDETQRRSFQATFHTVSMNIQ
DSPYTELLNCLPKS
NT seq
8505 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagatttgtcctgctctgatggtgtttgcaactgatacagaggtcaaggtgctg
ataaaagcatttctgccaaatttgaagtccaacctggcatcttgtagaagggcagcagcc
atgtgtctgacactgatctgtcagtactcaagaaatccaccaacatttattgaattttta
cttgttagtcttttagaattagtgttaccagttgagagagatattgagggtcctgttttg
gttggtgttatcatgtgtttgcgtaaccttatcccactgttgtcggaacatagcctcgag
gcacagggaatgaagggaagtttcggggaaacaaaaccactgaagacggaaactgtgtca
acggaacaaatcattactgtataccagctactggttcaccacctgagtcatgttgatcat
aacgttgttaattcatgccttgaagcattacaacaattgttacgtaccccacccactagt
ctgaagacagtactaaccagtgatggaggaatttcggagacatttatatacaagaaagac
atgaaaacacactctaatgtgctagcagatgtcccttcaacaagtcagttatcggtggca
tcagaagacacaggattggatgaagagtcagagtcatgtgatatcaagagccaatcagga
gtctcagacactgcctcatctgcatattcatcagagatggaccaatcagagacaaagtta
caggaaataagctctgctgattcagaaacagtaaaggagaacctagaaaatgctgaattg
gaaagtgatttaggggttgtgataaattgtgatgagcctgaggaatattctaatgttgaa
ataggtgaccttcaagaggacaagtctgagcaatcaggtttatctaatataaatacaggg
agtcaagaaactcttctcagtattaaaagcctgagtccaactcacaaaattgaaggcagg
ttagaaattattggtcaagacatgaatggtaatccggaaattgtagaacctgaattttgc
gagttagtgtcccccatgccaacagaaagtgatgtaaatattctagataaaattgggtca
gagacagagggtgtacctctagtgtattgcatgagggtgatctgtggtcgattcttgctc
tctgggaagccaggggaattgatgcctgacagaagggtgagggtcagcgtgaaaagtctc
gctctaggaaatgttgcttatgcagtaagactggcaccatcgttatttctacagaagtta
cagaaaacaagtggccatggttctgaggaaagtgcaataatacgtgacattctgctgtat
gcaagtcatcctgatcctcagttgaagggtacctgtagtataattattggtaatctagtg
tcggcggtcctcacagagggcaggggtgactttgataaatgggtcaaactgaacaatgag
aatacaggtaatttatgtctgtcgagtctggtagacactctgttgtttatagcagaggac
tcttcctcagttgctgcgagactcgctgtctccgctctcgggacgtgtctgccgaaactc
ctacacagtaaccatggtaacctagctatcaaagccttgctcaaactactacaagtgaag
aacaactcatactggcttgttaaggtagaagtaatggagtttgtacgcagcttggacttc
aaggtgatgaaacatctcgagaatacatgctcagctaaatttggacagaagcagttctta
gggcctttgtctctacaagatcatattttagaggaagtagtgctagtctatattggagat
gaagacggcagagtaagaaaagctgctgcgcacacacttgtcagattggtgaaacagctt
ttctacccagtggattttcctcatcaggatcctgtaattgcggttgccagaaacaatatt
gacaacttcttgtttcccacaatgcatgattggtgtcagcagcctcctcctcctgtgcag
ggattggtcagaccatatcatgtggcacctagactggttgtgcaatctactatggaaagt
gtcctctctagactggttttatcactcatggaaaaactcaacatggcaaaatccaaatat
cttatagcgggatgctgtcaggcattgagtatgttatcagaagtatatgagaccagttgt
tacccccatgcctggggctgtgcagttcctgtgcccttactccctaaagaaaccaccagt
aaatataggcgacctccaactcgctccctcagtggatctagtacatttagcctggatgag
ttaacaagtagcaccggtggaggacccttaccgttgattctgtctttgctgacctcatca
gctgtaacctttgacctttctactcaccagatggtccttcagctagcaggaaatctagtt
gctggaagtgcctacagatgtctgaagaaccaggatgttgatcaccagaagtctgacagc
cagtccgaagagggagcatggtcggcattatccaatcgtcttcttgtaccactgattgac
catcttctcacacatgtcgcaagaatactaaatgcgtttgcccatgtgatagatgagcag
cagcctggacctccacagatgaagaccgccctcccgtcactacccacagccccaagcctg
agccccattaaacgtaaagccaagggggagaaagaggctggttcagcccctaacactcaa
aaccaggatgttaaaaatacccctaaacctacacagaaagaaaaagacaaagaggcagag
aaggagcgaagtaagaaagatggtctcggcacattttatacagtgcctcattatgtaaag
ttctacgaagtgctgaaaggggcatactccaactataaaatttcattggacctgtcagta
acagataagttttgtgcgatgttgaagaccagtctgtatgtgttttctcaaattctggaa
gttgctaccctctcagatattggcaaatatgcagaggaattcctcaactatctgaagtct
actatatctctcgagcctacagatactgtactctgtgttcaacagttactgaaggcattg
tttggaacaaatctgtgtagtcagtgggaggagcatcaagtgcagaaccaaccgcgtaaa
cctggcaaggcaacacgactctctggtaacaaggatggcctgtatcagtgtacgtttaca
cagccatactcacagttcacacaggcacttgcagcagcggccatcaaggcagtcagtcca
gattatgaagatactacaggagttttaacatggctgaagaaatgtgtggagagaaaagtt
ccagctatactcaaaccaagcagcaaagctgacaagaccgctatagctgcatacattcgt
ctgtttgagccgctagtgattaaagcattaaaacagtacacagtaacaagttccttgccc
ctacagcaacaggtgctggacctgttgtctcagcttgtgcagctgcgggttaactattgc
ctgttagactcagaccaggtcttcattgggttcgtcatcaaacaatttgagtacatagag
gaaggacagatcaggaggtcaaatacactggtaccaaatattttcaacttccttgtgatg
ttgtcttatgagaagttccacagtaaaccagtgatcaccatgccgaaaataatacagctc
tgtgatggtataatggccagtggccttgacccaacttctcatgcaataccagctctgcag
cccattgtacatgatctattcctgctacggggagccagcaagtctgatatcagcaaggaa
ctggagacacaaagggaggtcattgtgtccatgcttctcagacttatacagtaccaccag
gcaatagagatgtttgtgatagtattacaacagtgtcacagagaaagtgaggagagatgg
aaacgattgtctcgacaagtaaccgatacagttcttcctgcactagctaaacaacagatt
gatttgaacagccaggtagccctagatgtggtacatagattgtttgagtcagtagctccc
atagtgttccgaccagtggatatcctcctcaaaactctgctcatgaaaccagctaacata
agcacgtgtaaaggtttggtgcgctggatgtgtctagttctctctgtactgagagtcctg
atggctcagacgaaggaagaagtggttctatccaggattcacgaacttggcctcaaattg
catgtgtttcagacgggcgaaagtgagattacggagagggaaagaggagttgtggatagt
ctatccccagaggagattatggcaagattattcctgcagataataggacactgcatagca
atgatcaacgaggtggcgctgcagtcagggtcaggtgacacattgtgtaacttcctgtct
caacaactgtcacacttgctcatgtatattacacacatgttccagtctggttcattcaga
agggtagccactgcctctgtgcagcaaataaaacaacgatctttggcctgttactatgac
atcaaggcaatcaaccatgacttcctgttgctaggggtgacacaaccgaccttgacctta
cagtggtgtaatgttctgatcctgatgaacttcagtgaccagagtttctggagtgatgtt
gtgaaaacaccaaagaaatatatcatggcatcttcaagcagttcagcagaggaaaaatcc
ccagaagaaacagatgttcagtccccacgtgctcagaggtgttgtaatgatgaaatactg
aggaggggagggctgattctgttctgtgattatgcttgtgagaatctgaatgactcggag
cacatgacctgggtgttgattaaccatgttcgggacctgatagaactctcagaggaggct
cctgttcaagactttattggtgcaatacacaggaattctgctgcaagtagtctgtttata
caggctatccatgcacgatgggaggatgtcactagaccctcactcgtcaggaagacattg
aagtgtttagatgcaatccatttttcacaaagtggagcattattgaccctactgattgac
aagtttctaagtacccaccacctggctgtggcacgtgcctgtgataatatagcttgtcga
agggtagaaatgctactggcagagtccccacaggagagagcccagcagttacctttagag
gatctagataaactgctcattttcatgaaaaagaacaagttaattgcaaaacatgctcgg
cttctgtcattgttggggaaatttagagaatctatagcagatgatactaagtctccaata
ccagctgaagtatcacattcacttaagttgcctccctttattggagatcttcaattggaa
aaggatggttatatgagtatagtaagagagcagtgttatgctcagaatggcagcagtagg
gagtgtgccagtctactacaacatctagactatgctgacatgctctctgtcatgatgaca
aaggagtttaatttgaacattatggaagaatgtatttcaattggtacccagcgaacactt
cagaaatacagcagagaatcagacattccttcaactgggaaccattcaaatgagtggatg
cttgatccattgtttcaagcctcccagctaacactgatgaggcatataaacaatattgtc
aatatgctgccagtccctcatgaaattatgaacttttatgaagccaaagatggacatatc
tcaaagtatttagagaaactagaagattttttcacagacagttcatcagtggatatagtg
tttaccctgacttcttccttattgcaatatttagtgtctatatcagtgtttccatggaaa
cctaaagtgccaacagaatctcagaatgatgtttgtagattttgtactttttgtttagag
tgtgtgagttggttgctatgcagtaacaatatgccaacagcagaacaactgagtatcagt
ctgcagtgtgtgaggacagtcctgcagaatccacaactctgctctctgattggtcaaacg
aatcatgtgacctgggtctgctcaatttccaaaactgtacatcagattgtgtctgccttg
tgtgtgttaccagggcaacagatgtgtgtacatgtcaggcatgaagatacccctaccaac
tcacacaaagatgatttgcattatttgacccaagcctgtgatgaagtgtcggaacttgtg
caatatgttctcactcagtcaagtttgtctggcatgaaccacggaaccaccgtacttcca
aacaacctctctagtcttatatcttctgttgttataggtctttcaagaactccagtgttg
aatagttttgctcgaacaccaccaattgtctggaagatgggctggatcccaactccaagt
ggggaaccaaagacaaagttacctcccctacctatagatctcatgctggataaagaggtc
ctcagagaatttgtccacaggatcagcataataggttggatatcacggcagcagttcgag
gagacatggatgtgtttactaggtgtattaaatcctgtttcaccggagcagcatttctca
cccgaggaagaggtagagaggacccactgtatggtgtatgctgtaagagctatcacaaac
atgctggtacaaacaatgatcgttccctctccgggaaaccctacccagggacagtttgat
gttcaacccagggataaaccacttgctttcttacacacaaggtgtggtaaaaaattgact
gtgatacggggcgttgtggagcatgaagtattgagattttcagccaacaacagaagaaat
acaggaccaagcacagactctgtgaagtacatgtttgattccaacctagaaagagataca
agtatagatgactttacacttggtcaggtgtctgtagaatcaatctggtcagttgtgggt
gtcctcgagcccaacatgtcggatatgtcggatactacagactctatagacagtcctacc
caccaggacacgccactcagtaacctagcaaccagcccctctgagacaacaatcactcgg
gatccgtcattatcagcagggggtttagatgtgcactcctgtctccagttccttctagat
ctgtacagacaatggctgatccccaactccaacaacaaaccaccacttatgttgctcaat
gaagttattaaatctgtggtatgtttatcagacctgtttgcggagagggaacaatttgat
tggatgttggatacgatgtttgaggtatacaaggctcaccctggagaagacgagatatca
ctacaatacctcactgtgggtatctgcaaggcggctgctgttgttggagtgctgatgaat
caccaagcaccagataacacttcgtcagatcgactaattaagattatagagaacggatta
cgcagcacgcacatacctagcaaagtgtctgctctacacggagtgctgtatctccttgag
gctggcattccagaagtcagtaaaccactggttcctgtcatcaccgagttcttgttgaag
actttaacctcagtttcacaacaagcagtgttcagtcagaagtatctgttaacgatgtgg
gcaacggctttctatattctcgagaattacaacattgatgttaaggacacagattttcct
tcacaaatactacagcttgctatcagtatggcatcaagcagtgaggaaggcgtatccact
accgtatatttagcgattctcaaaggcttggaaagacttctactcactgacgtgctcaca
tcccaggatgctgaagtcattgttaaacttagtgtggataggttgtgtttacccagtcca
cagagatcgttggcagctttaggtctgttgttcacgtgtatgtattctggaaaacagtat
gaaggttacagtccacgacccagagagcatgaagcatttaacatggaggagccaagcagt
ctgttacaggatccagagtcacttatccttgctatggaacgtgtcacagtactgtttgat
aggattaagaaaggctatccatacgaagcgcgggtgattggacgagtgttaccagcattc
ctagcagacttctttccggctcaggacatcatgaacaaagtgataggagagttcctgtca
agtcagcaaccgtacccacagctcattgctaaagttgtatttcaggtgttcagtaacttg
catgatcagcgacagcatggtttattgcgtgattgggtgatgttatcgttgtctaacttt
acacagaggacgccagtttccatggcgatgtggtcactcacttgtttcttcatcagtgct
tcaacaaatccctggctcagaaatcttttatcatatgtcctaacaaggatggggaaaata
gagttaattgacaagcatctgttttgtctggctgctctcgagttcttcactcaactcaca
gacgagacacagcggcgcagcttccaggcaactttccatactgtaagcatgaacatacag
gactctccatatacagaattgttgaattgtctaccaaagtcgtaa
DBGET
integrated database retrieval system
