Mercenaria mercenaria (northern quahog): 123548750
Help
Entry
123548750 CDS
T07835
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123548750
04121 Ubiquitin system [BR:
mmer04121
]
123548750
Enzymes [BR:
mmer01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123548750
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123548750
Ubiquitin system [BR:
mmer04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
123548750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
SGL
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
ANCHR-like_BBOX
zf-RING_2
DUF5711
Vgb_lyase
zf-RING_5
Invasin_D3
Neurexophilin
zf_RING-like
Peptidase_S3
Motif
Other DBs
NCBI-GeneID:
123548750
NCBI-ProteinID:
XP_045192205
LinkDB
All DBs
Position
6:60759720..60779012
Genome browser
AA seq
769 aa
AA seq
DB search
MASISDQIGDLGELGACPLCRRIYQDPRVLPCLHSFCKRCLERYHQENGSAETLKCPSCH
QEASLNSGGIEGIPSSIFISNILDVMVSQDDYENGEIENGHQNHWCNSCDEGSRATSVCK
NCHEYLCDNCVKAHQRVRLTKDHYIERFVNPRYRPQNITPCMPSPIISAAQGDRQQTPCT
KHEQEILRLYCDTCLSPICRECTMTEHVGHSFIYLQDAIDDSRTVTVKLIADAKAGMKAI
EESLQVTQGMAERVEVRSQSVATEIRNITRRHMLALEERERDLLRRVEKIRQVKGKSLHM
QMDDLKQGLMSLSRTVENVETVLNTGRDIDVLKTKESMVSEIQKLRSLRGHLQPHEDENI
LFTPPDAALHVAITKLGFISSSAYAPNCIAVGDGLKRALKGKVAIFVIQAKDHLGEQRVV
GGDPVECVIQSPEGALYRTEVIDRQNGTYSVTYRPQIEGQHAISVMINGKHIHDSPFSVS
VRSGRNYTAVGAMMMQFGGEGEDEGKLCRPWGICYHKEGYILVADRSNNRVQAFNPDGSY
HHHFGAAGTRNGQFDRPAGVATDSQGRVIVADKDNHRIQIFTLDGNFILKFGEKGNKNGQ
FNYPWDVAVNSEGKILVSDTRNHRVQLFTCDGLFINKYGFDGALWKHFDSPRGVCFNNEG
QMVVTDFNNHRLLVIHPDFHNARFLGTEGSANGQFLRPQGVVVDQEGNIIVADSRNHRIQ
VFQPNGNFLCKFGTPGSGPGQLDRPSGICVTPDGHVLVVDFGNNRVQVF
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggccagtatatcagatcagataggggacttgggagagcttggagcttgcccgttatgt
cgaagaatatatcaagatccaagagttctgccttgtttacattctttttgtaagagatgt
ttagaaaggtaccatcaggagaatgggtcagcggagacgttaaaatgcccgtcatgtcac
caggaagcgtctttaaattctggtggaatagaaggaattccatcaagtatctttatttca
aatattttggatgtgatggtgtcacaagacgattacgagaacggtgaaatagaaaatggt
caccagaatcactggtgtaattcatgtgatgaaggaagcagggccacatcggtttgcaag
aactgtcatgaatatctctgcgataattgtgtgaaagcacatcagcgagtgagactaacc
aaggatcactacatcgaaagattcgtaaatcccaggtacagacctcagaatatcactcca
tgtatgccgtctccgattatttcagctgcacagggcgaccgtcagcaaacaccttgcaca
aaacatgaacaggaaattcttcgtctttattgcgatacatgtctatcccctatctgccga
gaatgtaccatgactgagcacgtcggtcatagtttcatctacctccaagatgccattgat
gattctcgtactgtaacagtcaaactgattgcagatgcgaaagctggcatgaaagctatt
gaagaaagtctacaagtcactcagggtatggcagaacgtgttgaagttaggtcacagtca
gttgccacagagatccgcaatataactaggcgccatatgttagctttagaagagagggaa
agagacttgttaaggagagttgagaaaatacgacaagtcaaggggaaatctcttcatatg
caaatggatgacttgaaacaaggtttaatgtcgctgagcagaactgtagaaaatgttgaa
actgtgttaaacacaggtcgtgatattgacgttttgaaaaccaaagagagcatggttagt
gaaatacaaaaactgcgctcccttcgcggacatttacaaccacatgaggatgaaaatatt
ttattcacacccccagatgctgcccttcatgttgccatcacaaagcttggcttcataagc
agtagcgcttatgcaccaaattgtatcgctgttggggatggtttaaagagagccctgaaa
gggaaggttgccatatttgtcatacaagccaaagatcacttaggagagcagagagttgtt
ggaggcgacccggtggaatgtgtcattcaaagtccagaaggtgctctttatcgaacggag
gtaatcgacagacagaatgggacatacagtgtgacataccgacctcagattgaaggccag
catgcaatctctgttatgatcaatggcaagcacatacacgatagccctttctctgtatct
gtgagaagtggtagaaattatactgcagtgggggctatgatgatgcagttcggtggagaa
ggtgaggatgaggggaagttatgccgtccttggggcatatgttatcataaagaaggttac
attcttgtagcagaccgtagcaacaatcgagtccaggcatttaaccctgatggatcctac
catcatcactttggggcagcagggacacgtaatggacagtttgaccgcccagctggagtg
gctactgatagtcaagggcgggttatagtggctgataaagataatcatcgtatccaaatt
ttcactctggatggaaatttcatattgaaatttggtgagaaaggaaataaaaatggtcag
tttaattatccatgggatgtagctgtaaattcggaaggaaaaattcttgtgtcagataca
cgaaatcatcgtgtacagttatttacatgtgatggtttgttcattaacaaatatggattt
gatggtgctttgtggaaacattttgactcgcctcgtggagtttgtttcaacaatgaaggc
caaatggtggttacggatttcaacaatcacaggctccttgtgattcatcccgattttcac
aatgcaagatttctgggtacagagggaagcgcaaatggccagttcctacgtccacagggt
gttgtcgttgatcaagaaggaaacatcatcgttgcagattcacgcaaccacagaattcag
gtttttcaaccaaacggcaacttcctgtgcaagttcggcacaccaggttcgggtcctggt
cagcttgaccgaccatctggcatatgtgttacgccagacggtcatgttcttgttgttgat
tttggtaataatcgtgtacaagtattttaa
DBGET
integrated database retrieval system
