Mercenaria mercenaria (northern quahog): 123548936
Help
Entry
123548936 CDS
T07835
Name
(RefSeq) transcriptional repressor CTCF-like
KO
K23195
transcriptional repressor CTCF
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmer03000
]
123548936
03036 Chromosome and associated proteins [BR:
mmer03036
]
123548936
Transcription factors [BR:
mmer03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
123548936
Chromosome and associated proteins [BR:
mmer03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
123548936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-H2C2_5
zf-C2H2_16
zf-C2H2_7th_ZNF462
zf-C2H2_jaz
zf-met
zf-C2H2_2
zf-C2H2_REST
BolA
zf-C2H2_ZN142
zf-C2H2_15
NPB13-l_MII_rpt
Cys_rich_KTR
DUF7565
Motif
Other DBs
NCBI-GeneID:
123548936
NCBI-ProteinID:
XP_045192527
LinkDB
All DBs
Position
6:complement(49757554..49785142)
Genome browser
AA seq
1010 aa
AA seq
DB search
MEDETHNGGLGDPGPQNLNDLQSYLVNFNKEIGVHGEGSAFHHTVSQMINQSAQPVFVTV
PVSSETTTPDEEQLPVISGMKDGKSPDMDEGIDGAMTTGEDTLSSTGATDDHMIYEITPK
QSPLSQVVVDAQIEGLEAGRVQLQELNLEQLGLQQGIAVSDGMVMLPMGDACNLLGQTSD
HKVAQVQIVNINGQPTLQLVGDSSILQQQFNHTVVASEPQVIPSIVPNSSIQSLIDTTNP
IAVLASVDTTNPVAVLASVAANTNSVNQLQASQIQNIQIQPQEAQLVALRDDSDSTQPQV
LALSYGDMEAGSTGMIVSQEQEQQGTSLLKKSTGYQSVAILPSGDTSQGEVNYVLIVNPA
GDKDNNQGPTYDFGGNITGEVVEEVTDETGTTKRLVKINQLIARNNQLNIRDVPADQLAC
THCDYTSPKKYLLSRHMKSHCDDRPHKCGICSRGFKTVSSLQNHINTHAGVRPHKCKMCE
SAFTTSGELIRHIRYKHTFEKPHKCTECEYASVELSKLKRHMRSHTGERPYACAYCNYAS
PDTYKLKRHMRIHTGEKPYECDICHAKFTQSNSLKAHRLIHSGNKPVFQCSLCPTTCGRK
TDLKIHMQKLHSTDQPLLCKKCGSTFPDRYTFKVHFKSHEGEKCFRCTECDYSAISQRHV
DTHMLVHSGLKPFECEDCDLAFRQKALLKRHRNLYHNPHYIHQDVKDREPECKACEKSFG
NKSNVAGQIHNPSDALTERQVDSDETETDISNIHTCGGCPKSLVDSITPLTADQLIENSL
LADMKEGKLGASPKVVVVHPDGRVEEVTAKLQSLSQSKPMDDFLVSLGVSGDSHFDQVSG
LPADVIVSEVNTLVTSKDENSLESQPKYVQSNESSENIEVNEVNPTLDTSSFPVAAIVAG
LDIDHTKEEGTQASFDSDDEDKKVKVLSQEEFLSLAQGSTATDLRDCFEENGYRIIQVDQ
PIVGNVPQIVVSMLSTEENSLGKRTSDEIGDDDEEQALKRLRTETLQTDE
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgagacccacaatgggggcctcggagatcctgggcctcagaaccttaatgat
ctacaaagttaccttgttaattttaacaaggaaattggtgttcatggtgaggggtcagcc
ttccaccatacagtctctcagatgataaatcagtcagcacaacctgtgtttgtaacagtt
ccagtttcctcagaaacaacaacaccagatgaagaacaactacctgtcatatctggaatg
aaagacggaaagtccccagatatggatgaaggtatagatggtgccatgacaacaggggaa
gatactctcagtagtacaggagctacagatgatcacatgatctatgaaatcactccgaaa
cagtcacctttaagtcaagttgttgttgatgcacagattgaaggcctggaagctggcaga
gttcaactgcaggaattgaacctagaacagcttggattacagcaaggcattgctgtgtct
gatggcatggtgatgttaccaatgggtgatgcctgtaatctactaggacagacttcagac
cacaaagtggcccaagtacagattgtcaatatcaacggtcagcctacattacaacttgtt
ggtgattccagtattctacagcaacagtttaaccacacagttgtagcttcagagccacaa
gttatacccagtatagtaccaaactcatccatacagtcactgatagatacaactaaccct
atagcggtcctggcttcagtggataccacaaaccctgtggcagtactagcctcggtagcc
gccaacactaactctgtaaaccagcttcaagctagtcagatacagaacatacaaatacag
cctcaggaggcacagctggttgccctgagggatgattcagacagtacacagcctcaggta
ttggcattatcttatggtgatatggaggcagggtctactgggatgattgtgtcccaggaa
caagaacaacagggaaccagtctactgaagaaaagtacagggtaccagtctgttgctatt
ctgccctctggtgacaccagtcagggggaggtaaactatgttctaattgtcaacccagct
ggggataaagataataatcaaggacctacatacgattttggaggtaacataacgggggaa
gttgtagaagaggtaacagatgaaactggaacaaccaagagactggtaaaaataaaccag
cttattgccagaaacaaccaactgaacattagagatgtacctgctgaccagctcgcttgt
acccattgtgattatacaagtcctaaaaaatatttactttctcggcacatgaaatcccat
tgcgatgacaggccacataaatgtggtatatgtagccgaggctttaagacagtatcttcc
ctccagaatcatataaatactcacgcaggggtgcgacctcataagtgtaaaatgtgtgaa
tctgcatttactacttctggtgaactgatacgtcatattaggtataaacacacctttgaa
aaacctcacaaatgtacagaatgcgagtatgccagtgtggagctcagtaaattgaagcgt
catatgcgttctcacactggtgagcgtccatacgcatgtgcatattgtaactatgcatct
ccagacacatataaactgaaacgacatatgagaattcatacaggagagaaaccttacgag
tgtgatatctgtcatgcaaagtttacccagagtaacagtcttaaagcacacagattgata
catagtggcaataaacccgtgttccagtgttcactttgtcctacaacatgtggacgtaaa
acagatctgaaaatacacatgcagaagcttcactctactgatcaaccattactgtgtaag
aaatgcggctcgacatttcctgatagatacacgtttaaggttcatttcaagtcgcatgaa
ggagaaaaatgtttcagatgcactgagtgtgactattcagcgatatctcagcgacatgtt
gacactcatatgcttgtgcattcaggccttaaaccctttgaatgcgaagactgtgatttg
gcattccgccaaaaagcacttttaaaacgtcatcgcaatctgtaccacaatcctcattat
atacaccaagatgtaaaagatagggaacctgagtgtaaagcgtgtgaaaagtcatttggt
aacaaatctaatgtagcgggacaaattcataatcccagtgatgcattgactgagcgtcaa
gttgattcggatgaaacagagactgatattagcaatattcacacgtgtggaggttgcccg
aaatctctcgtcgacagcataacgccattgactgctgatcagttgatcgagaacagtctg
ttggcagatatgaaggagggaaagcttggtgcatcgccgaaggtggttgttgtacatccg
gatggtagagttgaggaagttacggctaaactacaaagtttgagtcagtcaaaaccaatg
gacgactttctagtttctcttggtgtatctggggactcgcattttgatcaagtatcaggt
ctgccagcggatgtaattgtgtctgaagttaacaccttagttacatcaaaggacgagaat
tccttggaaagtcaacccaaatatgttcagtctaatgaaagttcagaaaatattgaagtg
aatgaggttaacccaacgcttgacacaagcagttttccagtagcagcaatagtggcagga
cttgatatagaccatacaaaagaagagggtacacaggcaagtttcgattcagatgacgag
gataaaaaagtgaaagttctatcacaggaagagttcctcagcctagcgcaagggtcaaca
gctactgatttacgagactgttttgaagagaatggctatagaataatccaggtagatcag
cctattgtaggaaatgttccacagattgttgtatctatgctttcaactgaagaaaatagt
ttgggaaaaagaaccagtgatgaaataggtgatgatgatgaagagcaggcactgaaaagg
ttgagaacagaaacactgcaaactgatgaatga
DBGET
integrated database retrieval system
