Mercenaria mercenaria (northern quahog): 123549465
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Entry
123549465 CDS
T07835
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123549465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123549465
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123549465
mRNA degradation factors
5'-3' decay
Decapping complex
123549465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
123549465
NCBI-ProteinID:
XP_045193523
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All DBs
Position
6:20720482..20768674
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AA seq
1369 aa
AA seq
DB search
MQTLSGMVQNSGDATDPTLTELMKTMYDGAAPRQLITLQGTDTANSFSVYGQEVDIISSK
QMAKSQSLSGSTGSNKVKITPVVNYDWENRRYIGNLVAVHRGNGFVAYVLKGKTGGVVRI
TNRRTADRHLLKDFVGRVIDLAFAHTDDILLAVVDEIGNLCVYELKQTEDSKITSSMLLH
IHRPETTLVSEYHRVIWCPYIPDDADDSSATDSSTQDNASRVLVLTNDEKAEIWSIDLVT
KEYGLGPLYPQDVETGLIQINSHVKPIMDAAFSPDGTALATASIDGEVKFFQVYMHEQTS
PRCLHQWKPHNGKPMSCLFFLDDHKNCSPDAQFWKFAVTGANNNQEIKIWSCESWNCLQT
IRFLCPPGLPSNFSLEPCMKASLDLSAKFFILSDIKRNVLYVLQLHQDSEQNTAHVSSVS
EFTLAQPCLSFAILDAGTKRLKKSKGDDSHLDEITTGEIDKEELDDEDRKVEESTSSISV
QIKLYTVHPKALQELLIRFKPESSAPQPPPPSVSSISQSEGGVVDGLSDISMNVDGSGEH
DKSDSFSGAVPDHAHGQPMLLTPDAFTSSPRKQYPDDSLLDTVRGSMSSTSSFTQVSAMN
DDFLSPRSSSGSTITQTPTTPKMEPQSPSTAKSETTPSSVPLPPVTSSEEHELATPTSTA
REPEVREATPTPEETQEVDDFFQQKCSEKRDLQMVSLDSTESTGAYEVSEGRVHGKSQSS
YDEMDEEVAEVMGEDQDGFSEGPAEGTQPFEEREDTGQMGDSAESSLRAWPKPPDVGGTG
ETVDDTENVDEEEEEEEEDDDDDVVVEEEEENVVEGDFEGEKEGEADIEIEEEIEEEQEP
SEESLDSKREPMAAPVAGAGYAASPRENRPVEVREIHRETIREVFDQTELQKLHSNMAAI
LQAIQSQQQQMELLKHNMTEQQENYIELRRRQLEQEQLHQVSEGSQPSIEEHLGKLENIV
TSRVERLFNQHSQRENQRVQDILRQAETRDERKQERLQNMVAQSLGQAVNSHMDKVVRST
IIPSITKVLEPVKDQIHQEMSQKLTAADSLLRENVSHISKTFRSRQTVEAVGVAAGNAIQ
APMQAAYREAFQNIVIPSFERTTQSMYQQVTDSFQRGTKEYTRQLESHLEGIRQKHLETR
DPIVAELRKLTDSFQTSAEQMKSHVLATIQSQLNNEVHKSLSRLQDEMSQYVREAVREEV
AVAMREQGSTISDSVLSAMRSGAVTPMRATPDPQVEKTHIMNLLRQGQLNAAFQQALSAA
NLELVMSLCEAVNPSQVFNQQPCPLHQPVLLSLIQQLSADLENHTDLKHKYLEEAVMNLD
PHDSVTQEHMKGVLYALNQKLRIFMPAHPNDKVTRSLKMLLMASESLIK
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccttgtctggtatggtgcagaactctggggatgccactgatccaactctcaca
gaattgatgaagaccatgtatgatggtgcagcacctagacaactcatcactttacaaggc
acagatacagctaacagtttcagtgtatatggacaggaggtggatattatatctagtaaa
cagatggcaaagtctcagtccttgtcaggatctacaggctctaataaggtgaagataact
cctgttgtgaattatgactgggagaatagaagatatattggaaacttagtggctgtacac
aggggaaatggctttgtagcctatgtcttgaaaggtaagacaggaggcgtggtaagaatc
acaaacagaaggacagccgatcgtcatctattaaaggatttcgttggacgtgtcattgat
ctagcgtttgctcacactgacgatatattgcttgccgtggtcgatgaaattggaaatctg
tgtgtctatgagctgaaacaaactgaggacagtaaaataacctcctctatgctgttacac
attcatcgaccagagacaacattagtcagtgagtatcatcgtgtaatctggtgcccgtac
attcctgatgatgctgatgatagtagtgctacagactccagcacccaggacaatgccagc
cgtgtgcttgtacttactaatgacgaaaaggcagagatttggagtattgatctggtaaca
aaagaatatggcttggggccattgtacccacaagatgttgaaacaggcctgatacagatc
aatagccatgtaaagccaattatggatgcagcattttcacccgatggtactgcccttgct
acagctagtattgatggtgaagttaaattctttcaggtgtacatgcatgaacaaacatca
ccaaggtgcttacaccagtggaagccacataatggcaagccaatgtcatgtttgttcttc
ttagatgatcacaaaaactgtagccccgacgctcagttttggaagtttgctgtgactggg
gctaataacaaccaggagatcaaaatctggagctgtgagtcatggaattgtcttcaaacc
atcaggtttctgtgtccaccaggtttaccatccaattttagtttggagccatgtatgaaa
gcttcattagaccttagtgccaaattcttcattctttcagatataaaaagaaatgtcctc
tatgtgctacaattacatcaagatagtgaacagaatactgctcatgtgagttcagtgtca
gagttcactttagcccagccttgtcttagctttgccatattagatgcgggaaccaaaaga
ctgaaaaagtccaaaggagatgactcgcatctcgatgaaataacaacaggtgagattgac
aaagaagagttagatgatgaagatagaaaagttgaagagagtacatcaagtatctctgtt
cagatcaaactttataccgtccaccctaaggccctacaggagctacttatcagattcaaa
cccgagtcctcggctcctcagcctccgccaccgtccgtcagttcaatatcccagagtgaa
ggcggagttgttgatggactgtcagacatcagtatgaatgtagacggtagtggggaacat
gacaagagtgattcgttttctggcgctgttccagaccatgcccatgggcagccaatgctt
cttacaccagatgcttttacctcaagccctaggaaacagtacccggatgatagtttgctt
gatacagttaggggtagtatgtcaagtacaagcagtttcactcaggtatctgcaatgaat
gatgacttcctgtctccaaggagcagctctggaagcactatcacccagactccgaccaca
cccaagatggagccccagtctccatccacagccaaaagtgaaacaacaccttcatctgtt
cccctcccacctgtaacctccagtgaagagcatgaactggctacacctacctccactgcc
agagagcctgaagtaagggaagcaactccgacaccagaagaaactcaagaagtagatgac
ttctttcagcagaagtgttccgagaaaagagatttacagatggtatccctggatagtaca
gagagcactggtgcatatgaggtatctgaaggaagagtgcatggcaagtcacagagctcc
tatgatgagatggatgaggaagttgccgaggtgatgggagaggaccaggacgggttctct
gaaggaccagcagaggggacacaaccatttgaagaaagggaggatactggccagatgggc
gatagtgcagagtctagtttgagggcctggcctaaaccacctgatgtgggcgggactgga
gaaactgttgatgacactgaaaatgttgatgaagaagaagaagaggaggaagaagatgat
gatgatgatgttgttgttgaggaagaggaggaaaatgttgtggagggagactttgaaggg
gagaaggagggtgaggctgacattgagatagaggaagaaattgaagaggaacaagaaccg
tcagaggaaagtttggacagtaagagagagccaatggcagcacctgtggctggtgcagga
tatgcagcttctccaagggagaacagacctgtagaagtgagggagatacacagggagacg
attagagaagtgtttgatcaaacagaattacagaagctacattcaaacatggcagccatt
cttcaagctatacagagtcaacaacaacaaatggaattgttgaaacataatatgacagaa
caacaggaaaattacatcgagttaaggcgtcggcagctggagcaggagcaattacatcag
gtatctgaaggatctcaaccgagtattgaggaacatctcggtaaactcgagaatattgta
acctcaagggtagagagactgtttaaccagcactcacaaagagaaaatcagagagtacag
gatattttacggcaagcggaaacgagagatgaacgcaagcaagaaagattacaaaacatg
gtagctcaatcacttggtcaggcagtgaatagtcacatggacaaagttgtacgcagcacc
atcatccctagtattacaaaagtgctggaaccagttaaagatcagatacaccaggagatg
tcacagaaactgacagctgctgattccctcctgagagaaaatgtttcccacatctccaaa
acattcaggtcacggcaaacagtagaagcagtgggtgtagctgcagggaatgcaatccag
gcaccgatgcaggcagcttacagggaggccttccaaaacattgtgataccatcatttgag
agaactacacaaagtatgtaccaacaagtgacagacagcttccaaagaggaacgaaagaa
tatactagacaattagaatcacatttggaaggaataagacagaaacatctagaaactcgg
gaccccattgtagccgaattacggaaacttacagattccttccagacatctgcggaacaa
atgaaatctcatgtgttagccacaatacagtcacaacttaacaacgaagtgcataaatct
ttatcaaggttacaagacgagatgtcacagtatgtgagagaagctgtgcgagaggaggtg
gctgttgccatgagggaacagggtagcaccatcagtgatagcgttcttagtgccatgagg
tcaggggccgtaacccctatgagagcgacccctgacccccaggtagagaaaacacacata
atgaatctcctacgacaaggacagttgaatgcagcatttcagcaggcactgtcagcagct
aatctagaacttgtgatgagtttatgtgaggcagtgaacccatcccaagtgttcaatcaa
cagccatgtccccttcatcagcctgtcttgctctccctcatacagcaactgtcagctgac
ctagagaaccacacagatctgaagcacaagtatttggaggaagctgtgatgaaccttgac
ccccatgactctgtcactcaggaacacatgaaaggagtgctttatgctctcaaccaaaaa
ttaagaatttttatgcctgctcatcctaatgacaaggtgacaaggtcactgaaaatgtta
ctcatggcttcagagtcgttaataaagtag
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