Mercenaria mercenaria (northern quahog): 123550492
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Entry
123550492 CDS
T07835
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123550492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123550492
03041 Spliceosome [BR:
mmer03041
]
123550492
03036 Chromosome and associated proteins [BR:
mmer03036
]
123550492
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
123550492
Spliceosome [BR:
mmer03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123550492
Complex B
123550492
Complex C
U2 SnRNP specific factors
123550492
Chromosome and associated proteins [BR:
mmer03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
123550492
TFTC complex
123550492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
123550492
NCBI-ProteinID:
XP_053401885
LinkDB
All DBs
Position
6:52890802..52945852
Genome browser
AA seq
1216 aa
AA seq
DB search
MHLYNLTLQRATGITCAVHGNFSGSKLQEVIVARGKILELLRHDPNTGKIYPVLTQEVFG
IIRSLMPFRLTGGTKDYLVVGSDSGRIVILEFLAQKNMFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAVEKQKLVYILNRDAQARLTISSPLEAHKANTLVFYSVGVDVGFENP
TFACLEIDYEECDADPTGEAADKAQQLLTYYELDLGLNHVVRKYSEPLEEHANFLISVPG
GTDGPSGCLICSENYITYKNLGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIHLKYFDTIPVAASLCVLKSGFLFSASEFGNHNLYQ
IARLGDDDDEPRFSSASPLEEGTTFFFSPRPLKNLVMVDEMDSLSPITSCQIADLANEDT
PQLYTLCGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKKHSDDDYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSQLGEDALVQIYPDGIRHIRSDKRVNEWKTPG
KKNIVKCAVNQRQVVIALSGGELVYFEMDPTGQLNEYTERKEMSSDVVCMALGRVPSGEQ
RCRFLAVGLADNTVRIVSLDPSDCLSPLSMQALPAAPESLCIVEMGGTEAKEETGEAGTA
GGLFLNTGLQNGVLLRTVLDTVTGDLSDTRTRYLGSRPVKLFRIAMQGSEAVLAMSSRSW
LSYAYQSRFHLTPLSYESLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSHS
LQYTPRKFVIHPESGHLIIIETDHNAYTEATKAQRKQTLADAMIEDAHEDERELAAEMAA
AFLNEELPEAVFGAPKASAGMWASIIRVINPITGTTLDSINLEQNEAAHCLSIVKFSNSP
EETHVVVGVAKDLTLNPRTLGNGFLYTYKLIEGERLEFLHKTVVDEMPGAIAPFQGRALI
GIGKFLRIYDLGKKKLLRKCENKHIPNFVVGIHTMGNRVVVADIQESFHFVRYKRAENQL
IVFSDDTNPRWITTSCLLDYDTVAGADKFGNITVIRLPQDVTDDVDEDPTGNKALWDRGL
LNGASQKADILINFYIGEVVTSLQKATLIPGGSESLVYTTLSGGIGMLVPFTSHEDQDFF
QHLEMYMRQEHPPLCGREHLSYRSYFFPVKNVVDGDLCELFPSMDVAKQKSVAEELDRTP
AEVSKKLEDIRTRYAF
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgtacaaccttacgcttcagagggccacgggaattacatgtgctgtacatggg
aacttctccggctccaagttacaggaagtgatagttgctcgaggaaagattcttgagctg
ctcagacatgatccgaacacagggaagatatatcctgttcttacacaggaggtgtttgga
attatcagatctctaatgccatttagattaactggaggaaccaaagattaccttgttgtg
ggttccgactctggtagaattgtcatcctggagttcctagcacagaagaacatgtttgag
aaggtacaccaggagacattcggcaaaagtggatgtagacgtatagttccaggccagttc
ctagctgtggatcctaaaggcagagctgttatgataggtgcggtggagaaacagaagttg
gtgtatatactgaacagagatgcacaggccagactgactatatcctcgcctcttgaagct
cataaagcaaatacccttgtcttctacagtgtaggcgtagatgtcggctttgaaaaccct
acctttgcttgcttagaaattgattatgaggaatgtgatgcagaccctactggagaggcg
gcggacaaggcacaacaacttcttacatattacgagctggatctagggctgaaccatgta
gttagaaaatactctgaacctcttgaagaacatgcaaacttcttgatatctgttcctgga
ggtacagatggacccagtggttgcctgatatgctctgagaactacattacatacaaaaat
ctgggtgaccaaccagatatcaggtgtccaattcctcgcaggcggaatgatctggatgac
cctgaaagaggcatgatttttgtttgcagtgctacacataaaacaaagtcaatgtttttc
ttcctggcacaaacagaacagggtgacattttcaagattactttggaaacggacgaagat
atggtgacagaaatacacctcaaatactttgatacaataccagtggctgcaagcttatgc
gtgttaaagtcaggcttcctgttttctgcctcggaatttggaaatcacaatctgtaccag
atagctaggctaggggatgatgatgacgagccacggttcagtagtgccagtccgctagag
gaaggtaccacattcttcttctctcctcgaccattgaaaaatctggtcatggtggatgag
atggacagtttgtcaccaataacctcatgccagatagcagatttggccaatgaggacaca
cctcagttgtatacattatgtggcaggggtcccagatcttccttgagagttctcagacat
ggtctcgaggtatctgaaatggccgtgtcagaactgcccggtaatcccaatgctgtatgg
actgtgaaaaaacactctgatgatgactatgatgcttacattattgtgtccttcgttaac
gctacactggtactgtctatcggagagactgtagaggaagtgacagactcgggatttctg
ggtacaacaccaacactgtcatgttctcaacttggagaagatgctctagtccagatttat
ccagatggcatccgtcatatccgatcagacaagagagttaatgaatggaagacacctggc
aagaaaaatattgtaaagtgtgctgtgaaccagagacaggttgtcatagcactgtctggt
ggtgagcttgtctactttgaaatggacccaacaggacaactgaatgaatacacagaaagg
aaggagatgtcatcagatgttgtatgtatggcactaggacgggtaccgtcaggagagcaa
agatgtcggttcctggctgtcgggcttgctgacaatactgtcagaattgtctcccttgat
ccctctgattgtttgtccccactaagtatgcaggctctaccagcagctccggagtcactg
tgtattgtagagatgggaggtacggaggctaaggaggagaccggggaggctggcactgcg
ggaggattgtttcttaatacaggcttacagaatggagtattgttgcgtacagtgctggac
actgttactggagatttgtctgatacgagaaccagataccttggttcaagacctgttaaa
cttttcaggattgccatgcagggctccgaggcagtgctagccatgtcgagtcgttcatgg
ttgagttacgcctatcaaagcagatttcatttgacaccgctgtcgtacgagagcttggaa
tatgcctcgggctttgcctcagaacagtgtccagagggtatcgtagccatctctacaaat
actctcagaattttggctttggagaagttgggagcagtgtttaatcaagtatctcacagt
ttgcaatacacaccacgcaagtttgtcatacacccagagtctgggcatctcatcatcata
gaaactgatcacaatgcatacacagaggctacaaaagcacagagaaaacaaactcttgct
gacgcaatgatagaagatgctcatgaagatgaacgagagttggcagcagaaatggctgca
gcgtttctaaatgaggaattgccagaagccgtattcggagcaccgaaagcaagtgctggc
atgtgggcctccattatcagggtgatcaacccaattactggaacgaccctagactccata
aatcttgaacagaatgaagcagcccactgcttatcaatagtgaaattctccaactcccca
gaggagacacatgttgttgttggtgttgcaaaagatttaacattaaaccctcgcacattg
ggaaatggatttttatacacatataaactgatagaaggtgaaagacttgagtttttgcat
aaaactgttgttgatgaaatgccaggagccattgcaccattccaaggcagggctctgatt
ggaattgggaaattcttgaggatatatgatctcggcaaaaagaagctgttaagaaaatgt
gaaaataagcatattcctaactttgttgtgggtatccatacgatgggtaacagagtggtg
gttgccgatatccaggagagctttcactttgtcagatacaagagggcggagaaccagctg
attgtgttttctgacgatacgaaccctcggtggatcacaacatcttgcttgttagattat
gatactgtggctggagcagacaagtttggaaacattactgtaattcgattgcctcaagat
gttactgatgatgttgatgaggatccaactgggaacaaagcattgtgggatagaggttta
ctcaatggggcctcacagaaggctgatatattgattaatttctacattggtgaggttgtc
acatcactacaaaaggccactttaatacctggtgggtcagaatctctcgtttatacaaca
ttgtctggtggtataggcatgctggtacccttcacatctcatgaggaccaagatttcttc
caacatttggagatgtacatgagacaggaacacccgccactgtgtggccgagaacatctt
tcatatagatcatacttctttcctgtcaagaatgttgtggatggggacctgtgtgaattg
tttccgtcaatggatgttgccaaacagaaaagtgtcgctgaggaacttgacagaacacct
gccgaagtttcgaaaaagttggaagatatcaggacaagatacgccttctaa
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