Mercenaria mercenaria (northern quahog): 123551025
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Entry
123551025 CDS
T07835
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123551025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmer03400
]
123551025
DNA repair and recombination proteins [BR:
mmer03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123551025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
TPR_HPS5_insect
Motif
Other DBs
NCBI-GeneID:
123551025
NCBI-ProteinID:
XP_053396445
LinkDB
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Position
4:complement(12287843..12345645)
Genome browser
AA seq
929 aa
AA seq
DB search
MAVQPNQELKLDLSQEQGFISYYRSLSEKSSTTLRFFDRTEYYTVHGQDALFVAKEVFRT
SGVVKYLGSGEKKLESVVLNKMNFESFVRDLLLVRQYRVEVYKNKGGAKNNEWSLGFKAS
PGNLTQFEDILFSTADMSNSVGVIAVKLSTENGQRMLGVGYADATLRKFQVSEFTDNDQL
SNLEALIVQLGPKECILATGDTAANAGKLKQVLDRSGVLITERKKSDFTNKDSVQDMNRL
LKMKKGEQGNAASLPEVDKQHAMAALSAIIKYLELLSDESNFGQFTLSVFDLGQYMRLDA
AAVRALNLLPSSVEGGNKNQCLLGLLNRCRTAQGQRLLGHWVKQPLVDKNRIEERLNIVE
AFVEDTELRQMLFEDQLRRIPDFQRLAKKFQRKRASLQDVYRVYQAIDKMPYLLETLEKT
DSQHKSLLMDIFTNPLKELLMDFAKFQEMVEATMDLDQVENHDFVIKADFDEGLTALKEK
IDGLEDSIKGQMNKVARDLGLEPNKVLKLESNSQLGYFFRVTLKEEKALRNNKNYITIDT
KTNGVRFHNKAVRELNNDYLEAKEEYGEQQKSVVNEVIGIAAGYVEPMLIINDILAQLDV
LVSFSQVSTCAPIPYIRPTVLEKGSGIIKLKEARHPCLEMQDDIAFIPNDIQFEKDKQMF
HIITGPNMGGKSTYIRSVGVAVLMCQLGCFVPCSEAEITIVDSILARVGAGDSQLKGVST
FMAEMLETASILRSATDNSLIIIDELGRGTSTYDGFGLAWAISEHVATQLKSYCLFATHF
HELTALADKVPTVNNLHVTALTSNDTLTLLYRVKPGVCDQSFGIHVAELAHFPKHVIQFA
KEKACELEDYQCISLSGTDLEGEDEPAVKKRKLVKQEGEGLITEFLKKAKEIPIATLGEE
EVSKRIESLKEELKTKNNSYIEDILARKS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgcagcctaatcaggagttgaaattagatttatcacaagaacaagggtttata
tcatactaccggtcactttcagagaagtcaagtacaactctcaggttctttgacagaaca
gaatattacacagtgcatggccaggatgctttatttgtggcaaaggaagtgttcaggaca
tcaggagttgtcaaatatcttggatcaggtgaaaagaagttggagtctgtggttctcaat
aaaatgaattttgaatcatttgtacgagacttgttgctagtgagacagtacagagtagag
gtgtataaaaacaaaggtggagccaagaataacgagtggagtttgggatttaaggcatca
cctggaaatctgacccagtttgaggacatactgtttagcactgccgacatgtccaactct
gtgggtgtcattgctgttaaattgtcaactgaaaatggacagaggatgttgggtgttggt
tatgctgatgccacattgaggaaattccaagtcagtgaatttacagataatgaccagttg
tctaatctggaggcattgatagtacagttaggtccgaaggaatgtatcctggccactgga
gatacagctgctaatgctggtaaacttaaacaggtccttgacagaagtggtgtactcatt
acagagagaaagaaaagtgacttcacaaacaaagattctgtacaagacatgaatcgtctt
cttaagatgaagaaaggtgaacaaggaaatgctgcttctttacctgaggtagacaaacag
catgcaatggcagccttgtcggcaatcattaaatatctcgagcttttatcagatgagagt
aactttggacaattcacattgtctgtgtttgacttgggtcagtacatgaggcttgatgcc
gcagctgttcgtgccttgaatctgctgccaagttctgttgaaggaggaaacaagaatcag
tgtttattgggacttctgaacagatgtcgcacagctcaaggtcagaggttactcggtcac
tgggtcaaacaaccattagtggataaaaataggatagaggagagactaaacatagttgaa
gcatttgtagaagacacagagttgcgacagatgttgtttgaagatcaacttagaaggata
ccagactttcagagattggcaaaaaagtttcagaggaaaagggcttctttacaggatgta
tatagagtgtatcaggcgattgacaagatgccatatctgctagagacactggagaaaacg
gacagtcaacataaatctctgctaatggatatttttacaaatccattgaaggaattactg
atggactttgcaaagtttcaagagatggtggaggctaccatggaccttgatcaagttgag
aatcacgattttgttatcaaagctgattttgacgagggactgacggcactgaaagaaaag
attgatggattagaagatagtattaaaggtcaaatgaataaggttgccagggacctgggt
ttagagccaaacaaggtgttgaagttggaaagcaacagccagttaggatacttctttaga
gttacattaaaggaagaaaaggcattgagaaacaacaaaaactacatcaccatagatacc
aagacaaatggtgtgaggttccacaataaggctgtgagagaactgaacaatgattaccta
gaggcaaaggaagaatatggtgaacaacagaaaagtgtggtgaatgaggtcatcggtata
gcagctgggtatgtggaaccaatgttgattatcaatgatatcctggctcagttagatgta
ctggtcagtttctcccaggtgtctacatgtgctccaataccatacatcagacctacagtg
cttgagaaaggaagtggcataataaaattgaaggaggcaagacatccctgcctcgagatg
caggatgatatagcattcatacccaatgacattcagtttgaaaaagacaaacagatgttt
cacatcataacaggaccaaacatgggaggaaaatcaacatacattcgctcagttggtgtt
gctgtactgatgtgtcagctgggatgttttgtgccatgtagtgaggcagagatcactatt
gtagacagtatactagccagggtgggtgctggagacagtcagctgaagggggtgtccact
ttcatggcggaaatgttagaaactgcttctatactgaggtcagcaacagataattccttg
atcataattgatgagctgggaagaggaacctctacatatgatggctttggactggcatgg
gcaatctctgaacatgtagctacacaactgaagtcatactgtttgtttgccacccacttc
catgagttaacagcactagcagataaagttcccacagtgaacaatctacatgtaacagcc
cttaccagcaatgataccttaacactgctgtacagagtgaaaccaggtgtctgtgatcag
agttttggaatccatgtagctgagttggcacacttcccaaaacatgttatacagtttgct
aaagagaaagcttgtgagttagaggactatcagtgtatcagtctgtctggaacagatctg
gaaggagaggatgaaccagctgtcaaaaaaagaaaacttgttaagcaggagggagaaggg
ctgatcacagagttcttgaagaaagctaaagaaattcctatcgctacactcggtgaggaa
gaagtttccaaacgtatagaatctctaaaggaagagctgaaaacaaagaacaattcatac
atagaagatattctggcccgcaaaagctga
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