Mercenaria mercenaria (northern quahog): 123551030
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Entry
123551030 CDS
T07835
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase rpap2 isoform X1
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mmer01009
]
123551030
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123551030
Enzymes [BR:
mmer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
123551030
Protein phosphatases and associated proteins [BR:
mmer01009
]
HAD phosphatases
Fcp/Scp phosphatases
123551030
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
123551030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
STAR_dimer
Motif
Other DBs
NCBI-GeneID:
123551030
NCBI-ProteinID:
XP_045195578
LinkDB
All DBs
Position
15:35727092..35747860
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AA seq
688 aa
AA seq
DB search
MEMEAERKKAEQRRKIEYQVACEERAHRIVERLIDNPVTQEQLINALHYITPNHYGDIVE
ERAVAKQCGYPLCPKDLSDVPKQKYVISTKTNKVYDIESRKNFCSPRCYKASKHLECQIS
SDPVWSRKNMRPTQFDILALDLKTGKLGDEVIVSKAGVIRDDLSRLEKLDKYQKNLAERI
HEHNVDMEEEERARRSKSEKNENEESEVGENATEDGAVVYTLDKTMNELSLERNDRDEKD
GKQNDTEQLNDDMKSINDSESCIEKASGDKVNADSRETVDAQENNIHSAVKSTGSKTSKR
NKEAGPSKSKTDYLMQLLDKRKSLLAKMADIQNDNPKDEGKQKQEYEDRRVRETVADKAR
RDDNVARKKENITLVPEGTKTELPDLSAKQGESGEIKTSEKSYCKTVAEKKKEKDSIKNS
VKDEQKRTGGVSALDLICKGVQSWITLKSVEHLKVAEQDEKKLECSTVNKAFEKQYQDLV
AKVDAQEKDFDALLGEETMTSDHTDRPSAPLPHFDVLREELEADQIRVQEFMKGSFTYKV
KEKQSGDKDLEGSSIVVLPTVDRYDQLLIRQRIVIDRISKVLPDVLSPLHLLIQDVFTEL
RELICTFNLTSDNITFKPAEWTIVTVILLRMLSRRMITVQRSFTSPGAEKYFTLLLSSIG
AGIDSVDGIVNNLLKIEKPRKVRMISVE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggaagcagagaggaaaaaggcagaacagagaaggaagatagagtatcaagta
gcatgtgaggagagagcacatagaatagtggagagacttatagataacccagttactcag
gaacagttgattaatgctttacattacatcaccccgaatcactacggagatattgttgag
gaaagagctgtcgcaaagcagtgtggctatccactatgtcctaaagatttgtcagatgtt
ccaaaacagaagtatgtaatttcaacaaagaccaacaaagtgtatgatatagagtcaagg
aagaatttctgcagtccacgatgttataaagcttcaaaacatctggaatgtcagatttcc
agtgatccagtatggtcaaggaaaaatatgcgtccaactcagtttgacatcttggctctg
gatttgaaaacaggaaagttgggagatgaagtgattgtgagtaaggcaggagtgattagg
gatgatcttagtagacttgagaagcttgataagtatcagaaaaacctggcagagaggata
catgaacataatgtagatatggaagaggaagaaagagctagaaggtctaaaagtgaaaaa
aatgagaatgaagagtctgaagtaggagagaatgctacagaagatggtgcagttgtttac
actttagacaagacaatgaatgaactaagtttagaaagaaatgatagagatgaaaaggat
ggaaaacaaaatgatacggaacagttgaatgatgacatgaaaagcataaatgattcagaa
tcttgtatagaaaaagcttctggagacaaagttaatgctgactcaagggagactgtggat
gctcaagaaaataacattcatagtgcagtgaagtcaactggctctaaaacctcgaaaaga
aacaaagaagcaggtccaagtaaatcaaaaactgattacttaatgcagttacttgataaa
agaaagtctttgctagctaaaatggctgatattcaaaatgataaccctaaggatgagggt
aaacagaagcaagagtatgaagacagaagagtcagagaaactgtagctgacaaggctaga
agagatgacaatgttgcaagaaaaaaggaaaatataaccttagttccagaaggtactaaa
actgaattaccagatctctctgcaaaacaaggagaatctggggaaatcaaaacttcagaa
aaaagttattgtaaaactgtagcagaaaagaaaaaggagaaagacagtatcaagaattct
gttaaagatgaacagaaaaggacaggtggtgtgtcagcattagacttaatctgtaaaggt
gttcagtcatggattactttaaagtctgtagagcatttgaaagttgctgaacaagatgag
aaaaaactggagtgcagtacagtaaataaggcatttgagaaacaatatcaggatcttgtt
gctaaagttgatgcacaggagaaagactttgatgctttgctaggtgaggagacaatgacc
tcggaccatacagacaggccgtctgctccgctacctcattttgatgttctaagggaagaa
ttggaagctgaccaaattagagtgcaggagtttatgaagggatcctttacttataaagtg
aaagaaaaacaatctggtgacaaggatttggagggttccagcatagttgttttaccaact
gtggacagatatgatcagctgttgatcagacagaggattgtgattgacagaataagcaaa
gtattgccagatgtgttgtctcctttacatttgttgatacaggatgtatttactgaactg
agagagctgatctgtacattcaatttgacaagtgacaatattacatttaagccagcagag
tggaccattgttacagtgatactactcagaatgttatcaagaagaatgatcacagtccag
agaagttttaccagtccaggagccgagaaatatttcaccctgttgttgtccagtattggt
gccggtatagacagtgtagatgggatagtgaacaatttgttgaaaattgagaaacctaga
aaagtcagaatgatttctgtggaataa
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