Mercenaria mercenaria (northern quahog): 123551309
Help
Entry
123551309 CDS
T07835
Name
(RefSeq) SKI2 subunit of superkiller complex protein-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123551309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123551309
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123551309
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
123551309
mRNA degradation factors
3'-5' decay
Ski complex
123551309
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
123551309
NCBI-ProteinID:
XP_045196087
LinkDB
All DBs
Position
15:37267999..37311227
Genome browser
AA seq
1262 aa
AA seq
DB search
MASTSDLNINFDLVEVGVSGSFEVVPKVDRSKERIQLPLKTVPLGLPPVLPKIEDEFEKF
LFNLEDLPIHDVDRAQKFIPRVAEPLDLLHTDVTSLQTTIQVERNPTTGQLLGYKEEYLP
DMGKTAQNSLSLQRAPDPTSAGDVRGSSLNFPFWPGGQVEPELESLLKATENVDIDFEND
LLTVAPGLPEGMTFSAAVQKQQAEQTKSLEEQPKVMTLADIMTLGDDLDDLDVGDDEEFE
KATEDTKVPAKETIELQRSESLEKLVDTPSDKTTEVVTAPVRKEEPKEEWAINIDVNQPV
DDFYKRIPDMAYKWPFEPDVFQKQAILHLESHDSVFVAAHTSAGKTVVAEYAIALSLKHM
TRTVYTSPIKALSNQKYRDFKLTFSDVGLITGDVQINQTAACLIMTTEILRSMLYNGSDV
IRDLEWVIFDEVHYINDAERGVVWEEVLIMLPQHVNIILLSATVPNTLEFAAWIGRTKKK
KIYVISTTKRPVPLEHFLYTGNSNKTSNELFRIVDAKGSFSTTGYQKAIDAKKERATKSS
QSFGAKGTRGGHPNQDKNVWLSVIDMLKKKEKLPVVAFTFSKKKIDENATNLHSLDLTTA
KEKSEIHIFFHSSIKKLKGSDQQLPQVLQMEDTLKRGIGVHHSGILPILKEVVELLFQKG
LVKILFATETFAMGVNMPARTVVFDSIRKHDGTHFRDLLPGEYIQMAGRAGRRGLDTTGT
VIILCKGDVPEVSSLHKMMLGKPTKLESRFRLTYSMILNLLRVEQLRVEDMMKRSFSEFH
SQKDVARRKEDLQVLHKKLSTLEDIECFMCSVDLEPYWEACRDYHDLQKHLQGIILSHPA
AVKALSPGRVVIMNHEIDNSVLGVVLKTSSGANNERNFNILIICDKNNDSAKNSETSKNT
SSAINSNNSLESDAVKPVIKTKLFQPEGPCWHEMVQCKADSIAIVTTKTIRTDGEKVIND
IKKREQPRFRNDPPSQSVTTATQELLRMTEANSNGLPGLDPIKDLHLRDIELVEKFRSLE
LMKDKFLSYNCVNCPRFTEHFSQISSNMKLKEDYRRLQFLLSDASLTLLPEYQQRVEVLK
ALNYIDEHNAVQLKGRVACEISTHELMITELVFENAFTDLHPTEIAALLSSMVFEQKNCS
EPRLIDTLEKGRDRILEKAAEISQKQKKVGMQVDSEYEETFKFGLMEVVFEWARGMPFSE
ITNLTDVQEGIIVRCIQRLHETLRDVRNAARIIGDPVLYQKMEEASSMIKRDIVFAASLY
TQ
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtacatcagacttaaacatcaactttgaccttgtcgaagtaggggtcagcggg
tcttttgaagtcgttccaaaagtagaccggtcaaaagaaaggatacagctgcctttgaaa
acagtacctcttggcctaccacctgtactgccaaaaattgaagatgaatttgagaagttc
ctattcaatttagaagatttgcctatacatgatgtggatagagcacagaagtttatccca
agagttgcagagccacttgatttgttacacacagatgtgacttcgttacagacaaccatt
caggttgagcggaatcccactactggtcagctgcttggatataaagaggagtatttaccg
gacatgggaaaaactgcacagaactcactttctcttcagagggcaccagaccctacatct
gctggggatgttaggggtagcagtcttaacttccctttctggccaggtgggcaagttgaa
ccagagttggagtcattgcttaaggcgactgaaaatgttgatattgactttgaaaatgac
ttgttgacagtagcaccaggtttaccagaaggtatgaccttcagtgctgcggtgcagaaa
cagcaggcagagcaaacaaagtctttggaggaacaaccaaaggtcatgaccttagctgat
attatgaccttgggagatgaccttgatgaccttgacgttggagatgatgaagagtttgag
aaagcaactgaagacactaaggtcccagccaaagaaactattgaactacaaagaagtgaa
agtctggaaaagcttgtagacaccccaagtgacaagactactgaagttgtaacagcacca
gtcaggaaagaagaaccaaaagaagagtgggccattaatatagatgtgaaccaacctgta
gatgatttctacaagaggattcctgatatggcatacaagtggccatttgagccggacgtg
tttcagaaacaggctatacttcacttagagagccatgacagtgtgtttgttgcagcccac
acgtcagctggtaaaactgtggtagctgagtatgctatagctctatcgctgaagcacatg
acaagaacagtatatacatcacctattaaggcattatccaatcagaaataccgagacttt
aagctgacatttagtgacgttggcctgatcaccggagatgtgcagatcaaccagactgca
gcctgtcttataatgaccacagaaattctaaggtcaatgttgtacaatggatcggatgtg
atcagggacttagagtgggtgatatttgatgaggtccattatattaatgatgcagagaga
ggtgtagtgtgggaggaagtattgattatgttaccccaacatgtgaatattattctactt
agtgcaactgtacctaacacactggagtttgctgcatggataggtcgaacaaagaagaag
aagatttatgtgattagcacaacaaagagaccagtgccgttggagcacttcctgtacact
ggaaacagcaataaaaccagtaatgaactcttcagaattgttgatgcaaaaggaagtttt
agtacaacaggttaccaaaaagccatagatgcaaagaaggagagagcaacgaaaagttct
cagagttttggtgctaaagggacccgaggaggacatccaaatcaggataagaatgtatgg
ttgtcagtaatagacatgttgaaaaagaaagagaaattacctgtggtggccttcaccttc
tccaagaaaaagattgatgaaaatgctacgaacttgcacagtctagatctcaccacagca
aaggagaaaagtgaaatacacatcttctttcacagctcgattaaaaaactgaagggatct
gatcaacagttacctcaagttctacagatggaggacacactgaagagaggtattggtgtt
caccacagtggtatactgcctatactgaaagaagttgtagaacttttgtttcaaaaagga
cttgtcaaaatactatttgctacagagacttttgcaatgggggttaacatgccagcaaga
accgttgtgtttgattccataagaaaacatgatggcacgcatttcagagatctgttacca
ggagagtatatacagatggctggtcgagctggaagaagaggtctcgacaccacaggaact
gttatcatactgtgtaaaggggatgttccagaagtatcgagccttcataaaatgatgctg
ggcaaaccaacaaagctagaatctcgattccgcttgacgtactcaatgattctaaatctt
cttcgtgtggagcagctgcgagttgaagatatgatgaaaagaagtttttcggagttccac
agccaaaaagatgttgctagacgaaaggaagatcttcaagtgttacataagaagctctcc
actctagaagatatagaatgttttatgtgttcggtggacctggagccatactgggaggct
tgcagagactatcatgatctacaaaaacatcttcagggtattattctatctcatcctgct
gctgtgaaggcgttgtccccagggcgtgttgtgatcatgaaccatgaaatagacaacagt
gtactaggtgttgttctcaaaacatcctcgggtgctaacaatgagagaaactttaatatt
ctaatcatctgtgataaaaataacgatagtgctaaaaatagtgagacttctaaaaatact
agcagtgctataaatagtaacaattctttagagagtgatgctgttaagcctgtgataaaa
acaaaactgttccaaccggaaggtccatgctggcatgaaatggtgcaatgtaaagctgat
agtattgccatagtaacaacaaaaactatacgaacagatggagagaaagtaataaatgat
ataaagaaaagagagcaacccagatttagaaatgatcctccatcccagtctgtaaccaca
gcaacacaagaacttcttcgtatgacagaagccaatagtaatggtttacctggccttgac
cctatcaaggaccttcaccttcgtgatattgagctggtggaaaaattccgttctctagaa
ctcatgaaggataagtttttgtcgtataattgtgtgaattgcccaagatttactgaacat
tttagccaaatcagttcaaacatgaagttgaaagaggactaccgaaggttgcagttcctc
ctgtctgatgcgagtctgacccttttaccagaatatcagcagagagttgaggtattgaag
gctttaaactatatagatgagcacaatgccgtccagttgaaaggccgtgtggcctgtgag
atctcaacacatgagctgatgatcactgaacttgtgtttgagaatgcttttactgaccta
caccctacagagatagcagcattgttgtcatccatggtgtttgaacagaaaaattgtagt
gagccaagacttatagacactttagagaagggtcgggacagaatattggagaaggcagct
gaaatcagtcaaaaacagaaaaaagtaggaatgcaggtagactctgagtacgaggaaaca
ttcaagtttggactgatggaagttgtgtttgaatgggcaaggggaatgccattttctgag
attacaaatctaactgatgtgcaagaaggaatcattgtgaggtgtatacagaggcttcat
gagactttgcgagatgtccggaatgcagctcgtataattggtgatcctgtcctctatcag
aaaatggaagaggcttcctcaatgataaagagggatatagtgtttgctgcttcactgtat
acgcaatga
DBGET
integrated database retrieval system
