Mercenaria mercenaria (northern quahog): 123551311
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Entry
123551311 CDS
T07835
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
mmer03037
]
123551311
Cilium and associated proteins [BR:
mmer03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
123551311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_6
TPR_19
TPR_8
TPR_16
TPR_14
TPR_7
TPR_11
ANAPC3
ARM_TT21_5th
TPR_17
TPR_9
TPR_10
TPR_CcmH_CycH
ARM_TT21_N
TPR_21
HAT_PRP39_C
ARM_TT21_4th
ARM_TT21_2nd
ARM_TT21_C
TPR_15
HEAT_Nup120
Antiholin
Motif
Other DBs
NCBI-GeneID:
123551311
NCBI-ProteinID:
XP_045196089
LinkDB
All DBs
Position
4:complement(27915964..27959997)
Genome browser
AA seq
845 aa
AA seq
DB search
MAGVNRMSMMEQVHLAGEDEDDIYGGFNDYNATLDTDDLASDPSFQKAVLRTSHGRRPPP
TGFKGAAGGGAPVLGGARMGTAMRGGRAGPSSMGRPITGAAAGQDAQARPMTAVRAAGYT
AAGKRGVAGFDPLNQAAGPAPPLEPKPEDSPEEKIRQLEKKVNELIEESCFANSRGELNL
ALEKAKEAGRKERVLVRQREQMSMGDQINLDLTYSVLFNLANQYAANEMYNEALNTYQVI
VKNKMFSNAGRLKVNMGNIYFKQKNYPKAIKMYRMSLDQVPNSHKEMRTKIMQNIGIVFV
KMGQYSDAITSFEHIMSEAPSFKTGFNLILCYFALGDREKMKRAFQKLLTVDLKLDDEDK
YLPHGEDKQYNLVLEMIKNDSLRQIERERKYEAENCIKTAAKIISPAIEVSFDAGYDWCV
EQVKNSQYIDLAHDLEIDKAIMFLKQKDFNQAIETLKSFEKKDSKVACTAATNLSFLYYL
RNDQEENDLGQADKYAEVAMTADRYNPYALVNKGNVLYSKGDFEKAREFYREALQNDSSC
VEALYNLGLTNKRIGRLEDALDAFYKLHAILRNSPQVIYQIADIHDQLEDSAQATEWFMQ
LIGVVPTDCSVLARMGEIYDNDGDKSQAFQYYYDSYRYFPSNIPVIEWLGAYYIDSKFCE
KAIHYFERASIVQPTQVKWHLMIASCHRRSGNYNQALETYKYIHRKFPDNVECLKFLVRI
CSDLGLKEAQEYATKLKKAEKAKELKDQRASSGTRRGSGRRREGSAEADRETSASMRSGG
KRGARRRPNLDDADEEAYQPRKQEVDSNYVDPLGPQMERPKTAAKRRDFDDQFDDEELGE
DLLPE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgttaatcgtatgagcatgatggagcaagtacacctagcaggagaagatgag
gatgacatttatggaggatttaatgactacaatgcaaccttagatacagatgatttagca
agtgatccaagttttcagaaagcagtattaagaacaagtcatggtcgtcgcccacctcct
actggtttcaaaggtgcagctggtggaggtgctccggttcttggtggagccagaatggga
acagccatgcgtggtggtcgtgccggcccctcctcaatgggacgtccaatcacaggagca
gcagctggccaggatgcacaggcaagaccaatgacagctgtaagagcagctggctatact
gcagctgggaaaagaggagtagccgggtttgatcctctgaatcaggcagctgggccagcg
ccacccctggagccaaaacctgaagacagccctgaagaaaaaatccgacaattagagaaa
aaagtgaatgaactgattgaagagagctgctttgcaaacagtcgtggagagctcaatttg
gcactggagaaggcaaaggaagctgggcgtaaagagcgtgtgttggtccgacaacgagaa
cagatgtcgatgggagatcagatcaacttggatcttacatactctgtgttatttaacttg
gcgaaccagtatgctgccaacgagatgtacaatgaggccctcaacacataccaggtcata
gtgaagaataaaatgtttagtaatgcaggtcggttgaaagtaaacatgggaaatatttac
ttcaagcagaagaactatccgaaggccatcaagatgtacagaatgtcactagatcaggtc
ccgaactcacacaaggagatgagaaccaaaataatgcagaacatcggtatagtgtttgtg
aagatggggcagtacagcgatgctatcacctccttcgagcacatcatgtctgaggcgcca
agtttcaagaccggtttcaacctgatcctgtgttactttgctcttggtgatcgggaaaag
atgaagagggcattccagaaacttcttactgtagatctgaagttagatgatgaggacaaa
tatctcccacatggggaagacaaacaatacaacttggtgttggagatgattaagaacgat
tcccttcgacaaattgaacgagaaagaaaatatgaggcagagaattgcatcaagactgca
gccaagattatctcccctgcaatagaagtaagctttgatgctggatacgactggtgtgta
gaacaggttaagaattctcagtacatagatctggcacatgaccttgagatagacaaagct
atcatgttcctgaaacagaaagatttcaaccaggccatagagaccttgaagtcatttgag
aagaaagattcaaaggtggcatgtacagcggcaacaaaccttagctttctctactacctg
agaaatgaccaagaggagaatgaccttggccaggcagacaagtacgctgaggttgccatg
acagcagacagatataatccttatgcattggttaacaagggcaatgtgttgtattcaaag
ggtgattttgagaaagcacgagagttttatagagaagctttacagaatgattcttcatgt
gtagaagccctgtataacttaggtttaacaaacaagagaataggtcgtctagaagatgct
ttggatgcattctataaactacatgctattttacggaattctccacaagttatataccaa
atagcagacatccatgatcagcttgaggattcggcacaagcaacagaatggttcatgcag
ttgataggtgtggtaccaacagattgctccgttctggcaagaatgggtgaaatatatgac
aacgatggagataaatctcaagcgttccagtactactatgattcatacagatatttccca
tcaaacattcctgtgatagaatggcttggagcgtattacatagattctaaattctgtgaa
aaagctatccattatttcgagagagcaagtatagtacagccaacccaggtgaagtggcat
ttaatgattgcaagttgtcatagaagaagtggcaactataaccaagccttggaaacctat
aaatatatacatagaaaattccctgataatgtagaatgtttgaaattccttgtacgtata
tgttctgacctgggattgaaagaagcacaagaatatgccactaaactgaagaaagcagaa
aaggctaaagagttgaaagaccagcgtgcaagtagcggtacccggcgtggatcgggaagg
cgaagggagggcagtgctgaagcagatcgtgagacaagcgctagtatgaggtcaggcggc
aagcgtggggcaagaagacggccaaatcttgatgatgcagatgaagaagcttaccagcca
cgtaaacaggaagtagattcaaactatgttgacccacttggaccacagatggaaagacca
aaaacggcagcaaaaagacgcgattttgatgaccaatttgatgatgaggagctcggtgaa
gatctgttaccggaataa
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