Mercenaria mercenaria (northern quahog): 123551919
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Entry
123551919 CDS
T07835
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123551919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123551919
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123551919
mRNA degradation factors
5'-3' decay
Decapping complex
123551919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
123551919
NCBI-ProteinID:
XP_045197152
LinkDB
All DBs
Position
4:complement(62506137..62545783)
Genome browser
AA seq
869 aa
AA seq
DB search
MADTCFADYSTLGSRDVNSYDNELLEAPEEEGEFDVLNDETFGNLDDDDFDWEEQTEKFA
EVYDPEHAGHHHNDSGFNTAEKSYRTQEEYMEHSISQLMVDDDEPDPAILKSKPIPKNWA
FIPQRQQNLDSLFGPASPPSLLDAEHLVSPTSKNIWGSPLQEVPQPRPHLNNIQSLFDFA
KSANSDGPIASIHGPHSRSAPMVLPKAQTLEEIESSLLRKPKVLTAEELERQLRGESPSH
TSSLLTNGHPIPPAQFNIPPPNMASSLPMQHPPQMVPGPPPGMKGISNGHRSPVFNTPAP
IGTPVRVPPIPGGAPVSSTPQYRNRQSPVIMLTRRSPVPRSPTPPPLCVSPQTPQMVGVP
FRFVTPYATHSQPRYIATPGRGLSQPIGIPRAMRGPPPSNSPYNSPQGIYGSPQGPYQSS
HQQRFQQPGSFNEAYSNRNNSNTYQSSSHVKAQFEDRSRNEQASNKEHRYHRYPYNQKYE
SRQEHSGQRKRGSKDEDTYAGLMTQKEKEWIIKIQLLQLQTDNPFEDDYYYASWCLRKKA
KELEKDEVKENADRNLVIPSLARAENRAYKPAHFEGSLGRLTTSSVHNPRQIIDLLAKSV
SETAAGVSSKSTSNVGKELRKSRQLFMDIEKGYNLLLDIDTLEKQILALPEDMRKPLLEE
RSLRVDLLFHYLLCDGNSAAFMQYMNVRKGRSLTKRALPYLDKVQSVGIVSLVCKNLQQL
MKNDQADERLEELFLPCAKVIETCNLATVVMFVEDIQHEESPSTTKPIAMALQNKFGSSM
LCTLLHQGEHIYSTTSPVDLESNLQDEWCEFVHDFAGIMATIPLESITAPLQTYPDISKH
LERLLNKRLMAVVEDNLRVFTHPSVENES
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggcagatacatgttttgctgattactctactctggggtcacgtgatgtgaacagctat
gataatgagttattagaagctccagaggaagagggagagtttgatgttctcaatgatgag
acatttggaaaccttgacgatgatgattttgactgggaagagcagacagagaagtttgcc
gaggtgtacgacccggaacatgccggtcaccaccataacgactctggctttaatacggca
gaaaaatcctacagaacacaggaggagtatatggagcacagtatcagtcagttgatggta
gatgatgatgaacctgatcctgccatactcaagtccaaacctatacccaagaattgggca
tttattccacagagacaacagaacttggacagtttgtttggtcctgcctcgccgccatca
ttgttggatgctgagcatttggtgtcgccaaccagcaagaatatctggggttcaccatta
caagaagtgcctcagccacgaccacacctgaacaatatacagtcattgtttgattttgcc
aagtctgctaactctgatggtcctattgcttccatccacggccctcactcaagatcggcc
cccatggtgctaccaaaggctcagacattagaggagattgagagttctctgctgcgtaaa
cccaaggtgctgactgcagaagagttggagcgtcagcttcgcggagagtcgcccagtcac
acatcatcattgttaaccaacggtcatcccataccacctgcacagttcaacatcccacct
cctaacatggcatcctcacttcccatgcaacatcctcctcagatggtaccgggacctcca
cctggcatgaagggtatatccaatggtcacaggtcgccagtattcaatacacctgcacca
ataggaacaccagtacgcgtgccacctataccaggtggtgctcctgtgagcagtactcca
cagtacaggaatagacagtcgccagtgatcatgttaacccggcgatcaccagttccccgt
tcccctacacctccacccctgtgtgtaagccctcagactccacagatggtaggcgtgcct
tttagattcgtgactccatatgccacacacagtcaacctagatacatagccacaccaggg
cgtggattatcccagcctattggtatacctcgtgccatgagggggccaccgccatctaac
agcccctataatagtccccagggcatatatggtagtccacaggggccttaccaaagttca
catcaacaaagatttcaacagccaggtagttttaatgaagcatacagtaatagaaataac
agcaatacctatcagtcatcttctcatgtgaaagcccagttcgaagacagatccagaaat
gagcaagccagtaacaaagaacataggtatcaccgatatccatacaaccaaaagtatgag
tcccgccaagagcactctggtcagcggaaacgtggcagtaaagacgaggatacctatgca
ggactgatgacccagaaagagaaagaatggatcataaaaatacaactgttacaactacaa
acagataacccatttgaagatgattactactacgcttcatggtgcttgagaaagaaggcc
aaagagttagagaaggatgaagtcaaagaaaatgcagaccgtaaccttgtgataccatct
ctcgctagggcagagaacagggcttataaacctgctcattttgaaggatctcttggtcgt
ttaacaacgtccagcgtgcacaatccacgccagatcatagatcttctagccaagagtgtg
tcagagactgcggcaggggtcagtagcaaatctaccagcaatgtcggcaaggaactgaga
aaatctcgccaactattcatggacattgaaaagggctacaacctacttctggatatagat
accttagagaaacagattcttgctcttccagaggatatgagaaaaccacttctagaagag
aggtcactgagggtggacctgttgtttcattatttactctgtgatggtaattctgctgcc
ttcatgcaatacatgaacgtcaggaagggtcgcagtctcaccaagagggcactgccttac
cttgataaggttcagtctgtgggtatagtgtctctggtatgtaagaatttacaacagctc
atgaagaatgatcaggctgatgagagattagaggaactgttcctaccatgtgccaaggtg
atagagacgtgtaacctagcaactgttgttatgtttgttgaagacatacaacatgaagaa
tctccctccacaacaaaacctattgctatggcattacagaataagtttggaagttctatg
ttgtgtacattgttacatcaaggtgaacatatttacagtacaacttcacctgtagatctt
gaaagtaacctgcaagatgaatggtgtgaatttgtgcatgactttgctggaatcatggca
accattcctctcgagtcaattactgccccattgcagacgtaccccgacatatcgaaacat
ctagaacggctgctcaataaacgtctgatggccgttgtcgaggacaacctcagagtattt
actcatccgtcggtggaaaacgagtcctga
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