Mercenaria mercenaria (northern quahog): 123552523
Help
Entry
123552523 CDS
T07835
Name
(RefSeq) uncharacterized protein LOC123552523
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123552523
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
123552523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
KH_N4BP1_1st
Regnase_1_C
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Adenosine_kin
Motif
Other DBs
NCBI-GeneID:
123552523
NCBI-ProteinID:
XP_045198174
LinkDB
All DBs
Position
4:100216043..100230449
Genome browser
AA seq
1058 aa
AA seq
DB search
MENDTFSIDAANTKVIRKEKEKIERLFDVQVVISGNDYQSDGNEVTGFCQCRLVAKSTNA
QESVDKAKRYIQALTAGGPDFIIVTETYDVNVVKRIVHFKSDLERECCVVVALSQEMKSV
SIKGHRQDVEKAKQFTDHLAKEQNNKNQHDPKNTKPSDHVLMKNDSTDPANSYLNPYSAE
VTYSNDSDDDSSDDDEQVDRTTQNYQSKLEFAFKLGYGEADLMNALKSLDTDAGPNELLS
ELIKNSALRQGERDDEEAHYGGNDSGKGDLPDIQGNQRKAYIDNDSSPFRHVIMDGSNVA
MSHGNKETFSCMGIQLAVDWFKERGHTNITVFVPQWRKETSRSDARIKDQQILNELETEK
ILVFTPSRRIGGKRVVCYDDRYILKLAVDTDGIVVSNDNYRDLIGENDQFKKVVEERLLM
YSFVNDRFMPPDDPLGRNGPTLDNFLLKEPAEPEPLPPPCPYGSKKCTYGNKCKYYHPER
RTQPHKSVTEKLAEQAKQRMLEMRRENSLPADGKKKLTRTKTPLQRTQSGNPEELRKTEL
LHDSSGRNEDNKVDDYNQKLSEGLMKMELDRALSDSDSLRGSSPKKEDKRDFSPRSKLGD
QQGRSSPRLTELRQKGRGSSRGNSPVNLVVPGLPDQQDDGQKFLSGHLLLAKKLSDEANE
SDKLKKKSKPKDGLGSLNAKTQLKFTASEPQKQALGKKQPLSRTSEKQKLSRQLSLQGGE
DPRLGQDRVPLHAQLSYDPRRLRKDQPFAVGAINPSERQKMLQDFMHVQRLDLMSGGERG
IYGGEEQQQPRHLSHDFVRGHAALGRMQSAPDPCLQHHPTPRQTPAMMRQNSSSDTQLNK
MFSFESDMQMDGMMARGPSEGLQMRNRTDPLTFQIGGPTSQNMPHYQPMSSTGQSFSPVS
PLDYRFQASISPDYQHQGSHFLQSNPMLPHQQQNFNQGQTQYHFSPTNVPYLDHSNVWSA
QNQVQQNVNFPAQFVNRNLSPHTITNPDANLLPNNMKNMQGHIQPFPIETRVPQDNARIK
LYESLCNLFPKENVRMVMNQYPDEDNPKTLCAYLINCN
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgatacatttagcattgatgcagccaatacgaaagtcatacgcaaagaaaag
gagaaaatagaacgattgtttgacgttcaagttgtcatctcgggaaatgattatcagtca
gatggaaatgaggtcaccggattttgtcagtgtaggttggttgctaaatcaacgaatgca
caggaaagcgtggacaaagcaaagaggtatatacaagcactgacagccggtggaccagat
ttcataattgttacagaaacatatgatgtgaatgttgttaaaagaattgttcattttaaa
tctgaccttgagagagaatgttgtgttgttgttgcattaagtcaagaaatgaaaagtgtt
agtataaaaggacacagacaggatgttgaaaaagcaaagcagttcacagaccatcttgcc
aaggagcagaacaacaaaaaccaacatgaccctaaaaataccaaaccttctgatcatgtt
ttaatgaaaaatgattccactgaccctgccaattcctatttaaacccttacagtgctgaa
gtaacatattcaaacgactctgatgacgatagttcagacgatgatgaacaggtagatagg
accactcagaactatcagagcaagttagaattcgcttttaaactaggttatggtgaagca
gatttgatgaatgctttgaaaagtttggacactgatgctgggccaaatgaactgttgtct
gaattaatcaaaaacagtgctttgaggcaaggagaaagggatgatgaagaggcacattat
ggtggtaatgacagtggtaaaggtgacttgcctgacatacagggaaatcagaggaaagca
tatattgacaatgactcaagtccatttcggcatgtgatcatggatggaagtaatgtagca
atgagccatggaaataaagagacattttcctgtatgggaatccagttggctgtggactgg
tttaaggagcgagggcatactaatatcacggtatttgtaccacaatggcgcaaagaaaca
tctagatcagatgctagaattaaagatcagcagatactaaatgagctggaaacagaaaaa
atactggtatttactccatccagacgtattggtgggaaaagggttgtctgctatgatgac
cggtacatactcaagcttgctgttgatacagatggtattgtcgtttccaatgacaactat
agagacttgattggagaaaatgatcaattcaagaaagtggttgaggagagacttcttatg
tactcttttgtcaatgatagatttatgccacctgacgacccactaggaaggaatggcccc
acacttgacaacttcctgttaaaggaacccgcagagcccgaacccttgccaccaccttgt
ccatatgggagtaaaaagtgtacctatggcaacaagtgtaaatactaccatccagagagg
cgaacccagccacacaaatctgtcacagagaaattagcggagcaggctaaacaacgcatg
ctggaaatgcgtcgagaaaattctctgccagcagatgggaagaagaagttaactcgcacc
aagacccctcttcagcgaacacagtcgggaaaccctgaagaattgaggaaaactgagctg
ttacatgactcctctggaaggaatgaagataataaagttgacgactacaaccagaaactg
tctgaaggtttgatgaaaatggaattagacagggctttgagtgattctgacagtcttaga
gggagttccccgaagaaagaagataagcgagatttttcaccaagatcaaaactaggtgat
caacaggggaggtcaagtccacggctgactgaattgaggcaaaaaggcagaggttcctca
aggggaaattcaccagtaaatcttgttgttcctggactccctgatcagcaagatgatggt
caaaaatttctaagtggacatttgcttttagcaaagaaattgtctgacgaagctaatgaa
tctgataagttgaagaagaaatctaaacctaaagatggtcttggaagtctaaatgctaag
actcaacttaagttcactgcctcagaacctcagaagcaagcacttgggaagaaacaaccc
ttgtcacggacaagcgaaaagcagaaattgtctcgccagttgtcgttacaaggtggggag
gatccaagattgggtcaggatcgtgtaccacttcatgctcagttgtcatatgacccaaga
agattaaggaaagatcagccgtttgctgtaggggcaatcaatccttctgaaagacagaaa
atgttacaagatttcatgcatgtacaacgcctagacttgatgtctggtggggagaggggc
atatatggtggtgaagaacaacagcagcctaggcatttatctcatgattttgttcgaggt
catgcagcacttggtagaatgcagagtgctcctgacccctgtttacaacaccatccaacc
cctcgccagacacctgcaatgatgagacagaatagctcatcagatactcagttaaacaaa
atgttcagtttcgaaagtgatatgcagatggatggcatgatggcacggggtccatcagag
gggttacaaatgagaaacaggactgatccattgacattccagataggaggaccaactagt
caaaacatgccacactatcaacccatgagttctacaggtcagagcttttccccagtcagt
cccttagattaccgattccaggcatctatatccccagactaccaacatcaaggttcacac
ttcctccaatcaaatccaatgctccctcatcaacagcaaaattttaatcagggtcaaaca
cagtatcatttttcaccaacaaatgtcccatatctagaccattcaaatgtatggtctgct
caaaatcaagttcaacaaaatgttaattttcctgcacaatttgtaaatagaaatctatct
ccccatacaataacaaacccagatgctaacttgctgcccaacaacatgaaaaacatgcaa
gggcatattcagccttttcctatagaaacccgtgtaccacaagataacgccaggattaaa
ttatacgagtcattgtgtaacttatttcctaaggaaaatgtgcgtatggtcatgaaccag
tatcctgatgaggataatccaaaaacattatgcgcatatttgataaactgtaactaa
DBGET
integrated database retrieval system
