Mercenaria mercenaria (northern quahog): 123552800
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Entry
123552800 CDS
T07835
Name
(RefSeq) SR-related and CTD-associated factor 4-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123552800
03041 Spliceosome [BR:
mmer03041
]
123552800
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123552800
Spliceosome [BR:
mmer03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
123552800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
123552800
NCBI-ProteinID:
XP_053396862
LinkDB
All DBs
Position
4:32188264..32247659
Genome browser
AA seq
1321 aa
AA seq
DB search
MEAVRAFNNELSGLYETKPPVSRAKMAQVTKGAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSVVRQSRHQFGAQKDVFAPRFTKNIITTFQNLFKCPGDERSKIVRVLNLWQKN
EVFPSEIVQPLLDLAADPTKPSLLAAAQAAVDRVLEASGKVSGSSQQHQQQQQQAPAANE
PSDDGMNQAAAENMLATQNDMLNTVTQLLQQTNSGNTSLSAQQQQLQQLQLLQQQLIQQT
ALMQQPTGGAPLIDANLLAQIQALTNQLLQKTEAKPDEGGFNKKLLDFDYGESDDEEDKR
PPQQNITGDVQTILNDSGLMQQIHQVSQTIQKNNEYTTELTEQEKRRRILEQQQAEFDHQ
IAQGVQQPPLPFGSQPPAPDGDFVEEGEYTEEVQDEDFREHQQFRDRDDRDRRERRRRSR
DKSRSRTPKRRRRSRSRSRDRRRRSRSRDRHRRSRSKDREKKERERDRKKKGLPLVRANF
VTICTTTIWIGHLNKFTSEDELKTELERYGPVENINMVPPRGCAYVVMSNRKDAYKAIDR
LKGHKLNGSALKTAWAQSTGIRESEFKDSWDLDEGSMYIPWDNLPKDLSSFLEGAIIDGV
SLPDHLKDIPTEKVKVEQTEPPVTTTGQVTNTAGMINMAGQPPMPQMPGQPPMMGMMPGN
MPPMPGMMPGMPMMPMQRPVVPGMPPQAMPMTPGAPPQMMAGSQVPTMPGVRPPGAGVIP
QMPAMSIPSSAAANSLAQTIQNIMSTTAGVVPSSPSVPPRPTGLMPGMSPGGPPRFGFNP
NMPPPGFRLPPPGFGSPIRPLMGGPNNMPPTTKQSESSQLGERLSMLAGQGTKQPEMAWP
PDSNDKDDDMEEDDEINEDRSEIIQNNTSLPPGQFGRAQNMPPMGMDQSPMRMMGPPPPG
GFPPGGPPGPTNQPWNMNPRMGGPRQMRPQMGGTNMGPMGPMNQMMGGPGPRGPPFMGNM
QGGPGFQRFGGPRGPNPGNIRGPVSLLDLDLKPKDTFVGESFNNEDIKEPVEEDIGEVEE
GEEVPEENINSFEENEPEAEQDISNVYPFNTWKTVSRNNDDDRNRDRSGTRDRSNRGRDH
DRERDNDDRGRDRRDSRDRDRHRSRDHGRSRERDRSRDRDRGDRDRDRGDRDRDWKRRDD
RREDRKDRDRDRDRGDRDRSRKSRWSDVDNEKQNDNEKQNIDDKKHDTTLAQGDEGTTAT
EVEESIAVENSGNVSDNVQTSETSENVDENVNNSNGNGTETSDNKENEEKSENVSETTES
NKENIEQNENLNESSQNNGPVSEEKVDTASENKVELDKTTEENTESVQNVDMDLEEGEIS
S
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgttagagctttcaacaatgagctgtcaggtctgtacgagacaaaaccgccg
gtgtctcgggcaaaaatggcccaggtgacaaagggtgcaataaaggcaataaagttctac
aaacatgtggtgcagagtgtggaaaagttcatccagaagtgcaagccagagtataaagtt
cctggtctgtatgtgatagactcagttgtgagacagtcaagacaccagtttggtgcacag
aaagacgtctttgctccaaggtttacaaagaacatcatcacaacgttccagaacctgttc
aagtgccctggtgatgagaggagtaagattgtgcgtgtacttaatctttggcaaaagaat
gaagtgtttccaagtgaaattgtacagccgctgctagacctggctgcagatccaaccaag
ccatctctccttgctgctgcccaggcagcagtagatcgagtgttggaagcaagtgggaaa
gtcagcggcagttctcaacaacaccaacagcagcagcagcaggcaccagcagcaaacgaa
ccatctgatgacggtatgaaccaggcagcagcagaaaatatgctggccacacagaacgat
atgctcaacacagtcactcagcttctgcaacaaactaattctggtaacacaagtctgagt
gctcagcagcagcagttacagcagttacaacttctgcagcaacagttgatacagcagaca
gcactcatgcagcaaccaacaggtggcgctcctctcatagacgcaaatttactcgcacag
atacaagcactgaccaaccaactactacagaaaactgaagctaaaccagatgaaggagga
tttaacaagaaacttctagattttgactatggagagagtgatgatgaagaagataaaagg
cctccacagcaaaatattactggagatgttcagacaatcttaaatgactctggtctgatg
caacagatccatcaggtatcacagaccatacaaaaaaataacgagtacacaacagaactc
acggaacaggagaaaagacgtagaatcctggagcagcagcaggcagagtttgatcatcag
atagcacagggtgttcagcaaccacctctaccttttggttcccagcctccagctcctgat
ggcgattttgtggaagagggagagtacacggaagaagttcaagacgaggatttccgtgag
caccaacaatttagggatcgagacgatcgtgatagacgggagaggagacgcagatctcgg
gacaagtcccgatctagaacacctaaaagacgcagaagatcacgatcaaggtccagggac
cgtcggcgaagatcaagatcacgagatagacacaggaggtcaaggtcaaaagacagagaa
aagaaggagagggaaagagatagaaagaagaagggtctgcctcttgtgagagcaaacttt
gttaccatttgcactacaacaatatggattggacatttaaacaagtttacatctgaggat
gaactgaagactgaactggaaagatacggacctgtggaaaatattaatatggtgcctccc
agaggttgtgcttatgttgtaatgagcaatcgaaaagatgcttacaaggccatagaccga
ctgaagggccataaactaaatggaagtgcactgaagacagcatgggcacagagtacaggt
ataagagagtcagagtttaaagacagctgggacttggatgaaggttctatgtatatacca
tgggacaacctgccaaaagacctctcatctttcctagagggggcaataatagatggtgta
tctctaccagaccatttgaaagatataccaacagagaaagtgaaagtagaacaaacagaa
ccaccagtcaccacaacaggtcaggttacaaatacagcaggaatgataaacatggcaggg
caaccacccatgccccagatgccaggacaaccacctatgatgggtatgatgccgggaaac
atgccacctatgcctggtatgatgcctggaatgccaatgatgccaatgcagcgaccagtt
gtgcccggaatgccacctcaggctatgcctatgacaccgggagcaccacctcagatgatg
gcaggatctcaagtacccaccatgccaggggtcagaccacctggtgcaggggttatacca
caaatgccagctatgagtatacctagctctgcagctgccaattctctagcacagacgata
cagaacataatgtctacaacagctggtgtagtaccaagctctccttcagtgccacctcgt
cccactgggttgatgccaggaatgagtccaggagggccaccgagatttggctttaatcct
aacatgccaccaccagggttcagacttcctccaccagggtttgggagcccaataagacca
ttaatgggtggtccaaacaacatgccaccaacaaccaagcaatcggagtctagtcagttg
ggcgagagactttcaatgctggctggtcagggaacaaaacaaccagaaatggcgtggcca
ccagacagcaacgacaaggatgatgacatggaggaagatgatgaaataaatgaggatagg
tctgaaattatccaaaacaatacctctttacccccagggcagttcggaagggctcagaat
atgccacctatgggtatggatcaatctccaatgagaatgatgggtccgccacctcctgga
ggatttcctcctggtggacctcctggacctaccaatcagccatggaacatgaacccaaga
atgggcggacctagacaaatgagaccgcaaatgggaggaacaaatatgggtccaatggga
cctatgaatcaaatgatgggtggtccaggaccacgagggccaccttttatgggtaatatg
caaggtgggccaggctttcaacgatttggcggtcccagaggtccaaatcctggaaacatt
agaggtccagtctccctgctggatcttgatttaaaacctaaggacacttttgtaggtgaa
tcctttaataatgaagacattaaagagccagtagaagaggatattggtgaagttgaagaa
ggggaagaagttccagaggaaaatattaacagtttcgaagagaatgaaccagaagctgaa
caggatataagtaatgtttatccatttaatacctggaaaactgtgtctagaaataatgat
gatgatagaaacagagacagatctggaacacgtgatagatcaaaccggggtcgtgaccat
gacagagaaagggataatgatgataggggtcgtgacagacgagattctagagatagggat
agacatagatctcgtgatcatggtaggtctcgtgaaagggataggagtagagatagggat
cgcggagacagagatagggatcgcggagacagagatcgtgattggaaaaggagagatgat
cgtcgtgaagacagaaaggaccgtgatagagacagggatcgtggagacagagataggtca
cgcaagagtagatggagtgacgttgataatgagaaacaaaatgataatgagaaacaaaat
attgatgacaaaaaacatgatacaacactagctcaaggagatgaaggaacaacagcaact
gaagtagaagaaagtattgctgttgaaaattcaggaaatgtgtcggataatgtgcaaact
agtgaaactagtgagaatgttgatgaaaatgtgaataatagtaatggtaatggtacagaa
acctcagataacaaagaaaatgaagaaaaaagtgaaaatgtaagtgaaaccactgagagt
aacaaagaaaatatagagcagaatgaaaatttgaatgaatccagtcaaaataatggtcca
gtaagcgaggaaaaagtagatacagcctctgaaaacaaggtagaactagacaaaactact
gaagagaatacagaaagtgtgcaaaatgttgacatggacctggaagaaggcgagatatct
agttaa
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