Mercenaria mercenaria (northern quahog): 123553009
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Entry
123553009 CDS
T07835
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mmer03009
]
123553009
Ribosome biogenesis [BR:
mmer03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
123553009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
123553009
NCBI-ProteinID:
XP_053397711
LinkDB
All DBs
Position
4:77413055..77492038
Genome browser
AA seq
2941 aa
AA seq
DB search
MGKSGHHKKENTFRFQTFSERITNINIDVIHQIRHHDDTPEETLSYFGEALHKQSELNCT
DHFAHFKKEISDQVQTFAQLVYHEENIVSALKKHLVVANSMALPALLDLLVQLARDLQAD
FYRHFHEFFDILVKLLNTYTHDVEVLESTFTCLSYIFKFLWRYLLKDIQLVYRYFSSLLG
KQYKEYVRNFAAESFAFLMRKAKDPSALFDFLFSTLEEEPDKAEGIGRLLFEMMKGVKEQ
FHSCTAKVFPVLMKKLGPQEKQVVLPWQQVEVSMTTLIVSMTGHSSKEHMTQIWDMLLAS
LTETYGRWNSKKKNSEKLKVTETLERQLRLIKLLMEFHDGKLIAKPDAIAKILIDFLRGP
SLSDSTGLVLLEVSGCLLLTSHTKLEIENTSKLIPSVFKTSYPVHMIFDFTRRLFDLALF
EKDVLPSLLKYCEGCMSDGEEVEEQTLLLITQLLLNKCPLPADGNQLDQMDTYMLDFGTG
SSKFPGYIKMCVETNVETESITSVARVWAALVCLPHVRPLKDNGKHVEMLSKLIVNLMNS
EVDSGNSSENHDFLACQALVSMVMILQNEDVFQHVPLDSVIKCVCERSKNVHMLRLVDIY
FTHAVNMKHEDVLHVDTLLRIFPVLQENLSSPHSLVRLHTLRIFSSFDLPLPPTDFEVLD
IFTICLCAETTAANVHEYREKLRHLQKLDYTTVQNSIPAGPFSQVPLRYLIGSLFVNFKL
LWEPIRTLISSHAHNMERDAFWEVFSQQLEVAAERAEVELFGKSSAKIAETEDGQTDGII
SVFTHTVQELNSCAEPQPSYSNFRVQMWKTMHEFPEKCSSKSRVFVPLLFRFLKNEYYLT
DLSVAPSQNVLRQIQEQVAMETDTEESNTLNSEKSNNVEMKEDETQMSQKLRKRKQNEND
SDESSDDDDVENVRRYTRSRTANIKPDGTEEMKADVEIGRVRTRSQCSVDDESSETKKVS
KKLRTRGRNHSETEESDIDLNVRKKKGDIQSRIQTRSMDDSESEAEKSGKSKLKKATPVR
RMRTRSSQVDTSEEEMSDDDDDEEKEEDNSDTEGDNVEEENKLKEKKRLSAIHETNDEME
VVMNEKDMKEIEKDTDKGKEKKGGINKDKSSKHDEGKAVVKKQRKAAASSLLVQLELFAK
FKDPKSMFMESQLRQLYFDLLVHKNADVQRTAFQCILTYKYKYLIPYRENFNRLLEDKSF
KNEIVLFSIDNENSVIDKEHRADVLPILMRILYGKMHVKTGKGTAGKQFSKIRQSIVLRF
LNGCQNEELKMFIDLVFTSCQQFITENPYKMAQDIKENTDLTNVLPVKKMQGALNSIDMI
FKKLGHLMDSFLPSIIQMIVGLGTLCGVLLENRNRLVPHVINPLKDIRQNSIYRMIQILE
DYDKYPWRPVELDAMFEALVWPQLDKLSFEGLYHPTPLLKLLLCCTKNPRYFSLLGKHHK
DKPELSPLPQIMKLLLKKDVSSHVTSCIMEMVYNLLEETDEEEEVKVIEVNSMINLQSAE
NVKESDIGIRLILPHVPDILAYIQTFVSTLNTQLHKKSKISGKELDILSRVSSFVQDEEM
SATLVNLLLPFLNPKYAKPQKVEEDILTSILNLLKHISDRMPFFKPISKLFATLPQRPSR
LLLTQAFTVICEEDEDLKPLGVIVQRLNSWDRTRMDEPDYMLRLEGYRSATSLLKSMVAM
DTRICLTLIYNCCFFISTVEDMSLRDSSTLCMVTMVNQFGVLPFDEGTYKKVIILTLLQQ
IKTGLRSKKQTVFHEFVTILATLVDTFGDQPTFTDLKPLRDKDIDADFYENIKHIQVYKR
SRALRRLIKYLYSNKVNFDTLTNIFLPMVSSFLIDDLYKKHTTVLDAAVDAIGTICKLLP
WKSYLNQLRHYLTLLSRKLEKQKLLVRVIVSVLDNFHFDLSKSTLNVKNTPVPKVEREPE
EKPSIQPDQVDLQKDEETATEDAEEPVTEINEEGETTEVELDKGKQLCSEPLATKIHGTI
LKSVIHQLHRILVQKARSDGEHKIVKSKYAEDEEILRVPIALAMVKLLQNLPRGALGRYL
PGILLKVCNFLKSRSIEIRNTSRDTLVKIQTTLGPRFFPFILSELRGTLRRGYQRHVLCY
TVHQLLKHMESVVRPGDIDICLKNLQEVLNEEIFGEVSDEKVVAGIKAKVFEARSSKSYE
SYEFIARYISPGSLMKFLEPIKKILDSTSSHKSARKVHEVLKRVTAGLLDNKNVTTETLL
VFVHGLTTQTLPMLSEEKVAPKVENTKNQPGKQPPSCLLIPKAAPRGGLKPKASKKTNKH
VLVEFGLQLLSMCLKKQKIVKTDSSHLQMLDPLVAMLADCLYSKYVLVNANSLRVLCKIL
KFPIPSLETHISRISSGMFILLRNYASAGAARGDNLELVSMLFKAITVLVREVKFYNLEP
GQLQVLLTFCEEDIHDFNRQSTAFSLLKAILSRKLDIPEIHELMKKVEEMSISAETAHVQ
RECRQAMMQYLLDYRHGKKLRGHLQFYVSNLTFELETGRESALEMLASFFTSFPQNLLAE
YSGLFFVPMAASLANDESAKCRKLIALAIKTLLGKLEHNSRTSLFGIALKWFMDEKLRHR
SLAAQLCGLFVEVESAQFESRLSDTLPVIEQQLEPGKYKQVDSASLEHDQDLMIYHTLNT
LLKILRECSQLVTSSKWETNMNVIWEHVVTYLSYPHIWVQLAASQLFGLLFAAWPPDQLV
TKATKSSTQYISVDTYKKLRTLSGDFLTQLQSELLNDELASQVIKNMIFLTKCARYMSQI
EQEPGEGEEEDKVKGLSVLWLVRKMVREANHEAINNNKMTIKRIHVFKWLAAVALDIGDT
METNVLNAMLPPLQRELNDQSMYQDASLRSLAQEVVDLLKKTVGVEKFTGSYASTQKVRA
ERKDERKRQRAVQAVANPELHAKRKLKKNLNKIEAKKRKIEHFKPSKKAKKRKYQEFAIT
D
NT seq
8826 nt
NT seq
+upstream
nt +downstream
nt
atggggaaatccgggcatcacaagaaagaaaatactttcaggttccaaaccttttcagaa
aggattaccaacataaacatagatgtcatacatcaaatacgacaccatgacgacacacca
gaggaaactttgtcctactttggagaagctttgcacaaacagtctgaactcaactgtaca
gatcattttgcacatttcaagaaagagatatcagatcaggtccagacatttgctcagctt
gtctaccatgaggaaaatattgtatcagcccttaagaagcatcttgttgttgcaaacagc
atggcccttccagcactacttgatttgctggttcagttagcaagagatttacaagcagac
ttttatcgacattttcatgaattcttcgatattcttgtcaaacttctcaacacttacaca
catgatgttgaagttttggagagcaccttcacctgcctttcctatatcttcaagtttcta
tggcgctacctgctgaaagatatacaacttgtttacaggtatttttcatccttgcttggc
aagcagtacaaggagtatgtacgtaactttgcagctgagagttttgcattccttatgaga
aaggcaaaagatccttcagcattgttcgatttcttgttctctacacttgaagaagaacca
gataaagcagaggggattggtagattgttgtttgaaatgatgaaaggagtgaaagaacag
ttccacagctgtacagctaaggtttttcctgtactgatgaagaagctgggtcctcaggag
aaacaagtagtgttaccatggcaacaagtggaagtttccatgacaacattaattgtatca
atgacaggtcattccagtaaggagcatatgacacagatatgggacatgctgctggcatct
ttaactgagacctatggtagatggaatagtaaaaagaaaaactcggagaaactgaaagtg
acagaaaccctggagaggcagttaagactgattaaactattgatggaatttcacgatgga
aagttgatagctaaacctgatgctatagccaagattttgatagattttctacgaggtccc
agtctatcagactctactggactggttctgttggaggtttctggttgcctgttgttaacc
agtcatacaaaactggagattgagaatacttctaaacttatcccttcagtattcaagaca
agctatcctgtacacatgatatttgacttcacaagaaggttatttgaccttgccctcttt
gagaaggatgttctaccatccctcctcaagtactgtgagggatgtatgagtgatggtgag
gaggtagaggaacaaacactattgttaattactcagttactactcaataagtgtccgcta
cctgctgatggcaatcaactggaccagatggatacatacatgttagattttggaacagga
tcatcaaagtttccagggtacattaaaatgtgtgtagaaaccaatgtggaaacagagagc
atcaccagtgtggctagggtgtgggcagctttagtatgtttgcctcatgtcagaccttta
aaagataatggaaaacatgtagaaatgctatctaaattgattgtgaatttaatgaactct
gaagttgactctggaaattcaagtgagaatcatgactttctggcttgccaagctctggtt
tccatggtgatgattttgcagaatgaggatgtattccagcatgttcctctcgattctgtc
atcaagtgtgtatgtgagagaagcaagaatgtacacatgttgaggctggtggatatttac
tttacacatgctgttaatatgaaacatgaggatgttttacatgttgatacgctactaaga
atattcccagttctacaggaaaatctctcatcaccccactctctggttcgcttacataca
ttgagaatattttctagctttgatcttcctttaccaccaactgactttgaagttttagat
attttcacaatttgcctctgtgcggagacgactgcagccaacgtacatgaatatcgtgaa
aagttgagacatcttcagaaattagattatacaacagtacaaaacagtatccctgcaggt
cctttcagtcaggttccactgagatatttaattggaagtttgtttgtgaatttcaaactg
ctgtgggaaccaatcagaaccctgatatctagtcatgctcacaatatggagagagatgca
ttttgggaagtattctctcaacagttagaagttgctgcagaaagagcagaagtagaattg
tttggcaaatcatctgcaaagatagcagaaacagaagacggacagacagacggtataata
tcggtattcacacatactgttcaagagcttaacagttgtgcagaacctcagcccagttac
agcaacttcagggtccagatgtggaaaaccatgcatgaattcccagagaaatgctcctca
aaatctagagtctttgtacctttgttgtttaggtttctgaagaatgaatactacctgaca
gatttaagtgttgcaccaagtcagaatgtgctgagacagatacaagaacaggttgccatg
gaaacagacactgaggaatcaaatacattaaacagtgaaaaatcgaataatgtagaaatg
aaagaagatgaaactcagatgtcacaaaagttgcgaaaaaggaaacaaaatgaaaatgac
tcagatgagtctagtgatgatgatgatgtagaaaatgtgagacgatatactagaagtaga
actgctaatattaaacctgatggaactgaagaaatgaaagctgatgttgagataggtaga
gttaggactagaagtcagtgcagtgtagatgatgaatcaagtgaaactaaaaaagtatca
aagaagttgagaactagaggtagaaatcatagtgaaacagaagaatctgacattgatcta
aatgtgagaaagaagaagggggatatccagtcaagaattcaaacaagaagtatggatgat
agcgaaagtgaagcagaaaagtcaggtaaaagtaaattgaaaaaagcaactcctgtaaga
agaatgaggactagatcttcccaagttgatacaagtgaagaggagatgtctgatgatgat
gatgatgaagaaaaggaagaggataatagtgatacagaaggtgacaatgttgaggaagaa
aacaaactcaaggaaaagaaaaggttaagtgcaatacatgagactaatgatgaaatggaa
gtggttatgaatgagaaagacatgaaggaaattgagaaagacactgacaagggaaaggag
aagaaaggtggcattaacaaagataaatcaagtaaacatgatgagggtaaagctgttgtg
aagaagcaaaggaaagctgcagccagttctctgttagtacagcttgaactgtttgcaaag
tttaaagatccaaaatctatgtttatggaatctcaactcagacaactctattttgattta
cttgtacataaaaatgcagatgtacaaagaacagcttttcagtgtattctgacatacaag
tataaatatcttataccatatagggaaaattttaacagacttctagaggataagtcgttc
aagaatgagatagttctgttcagtattgacaatgaaaacagtgttatagacaaggaacat
agagcagacgttcttcctattctcatgagaatattatatgggaagatgcatgtaaaaaca
gggaaagggacggctggaaaacagtttagcaagataagacagtctatagtgttacgcttc
ctcaatggctgtcagaatgaagaactgaaaatgtttatagaccttgtgtttacttcatgt
cagcagtttattacagaaaatccttacaagatggctcaagatataaaagaaaatactgat
ttaacaaacgttctacctgtgaagaaaatgcaaggggctttgaattctatagatatgatc
tttaagaagctgggtcacctgatggactcatttcttccaagtattatacagatgatagtt
ggactgggcacactgtgcggtgtattacttgagaatcgcaacagattggtaccccatgta
atcaatcccctcaaagacatcagacagaattctatttatagaatgattcagatactggaa
gattacgacaagtatccttggagaccagttgagttggatgccatgtttgaggccctggtg
tggccccaacttgataaactttcgtttgagggtctctaccatcctaccccattgctaaag
ttactgttgtgctgcacaaagaatcctaggtatttctcattgctgggaaaacatcacaaa
gacaaaccagaattatctcccctaccacagataatgaaacttctgctgaagaaagatgtc
tctagtcatgtgacaagctgtatcatggagatggtttataatcttctagaagaaacggat
gaagaagaagaggtcaaggtcattgaggtcaatagtatgatcaacctgcaatctgctgaa
aacgtcaaagagagtgatataggaataaggctgatactaccccatgtgccagacattcta
gcttacatccagacttttgtttctacactgaatacacaacttcataagaaaagtaaaatc
tcaggcaaagaacttgacattctttccagagtcagcagctttgtccaggatgaggagatg
agtgcaacacttgtcaatctcttactgcccttcttgaatccaaaatatgcaaaacctcag
aaagtagaagaggacatattgacaagtatactcaatctactaaagcatatctcagacagg
atgcctttcttcaaacctatcagtaaattgtttgccaccctgccacagaggccatccaga
ctgctgctcactcaagcttttactgttatttgtgaagaagatgaggatctcaaaccactt
ggtgttattgtacaacggttgaactcctgggatcgtacacgtatggacgagccagattac
atgttgcggctggaaggttacaggtcagcgaccagtctgttgaagagtatggttgccatg
gatacaaggatctgtctcactttaatatataactgctgtttctttatatctacagtagaa
gatatgtctctacgtgatagctccacactatgtatggttaccatggtgaaccagtttggt
gtcctaccttttgatgaggggacttacaaaaaagtgataattttgactctattacaacaa
attaaaactggacttcggagcaaaaaacagactgtgttccatgagtttgtcactatatta
gctacattggtggatacatttggagaccagcctacatttacagatctcaagcctctgcgt
gataaagatattgatgcagatttctatgagaatatcaaacatattcaggtatacaaaaga
tcaagagctctgcgtcgactgatcaagtacctatattccaacaaagtgaattttgacacc
ctgaccaatatattcctaccaatggtgtcatcattcctgatagatgacctgtacaagaaa
cataccactgtacttgatgcagctgtagatgctataggaacaatatgtaaactgttgcca
tggaaatcttatctcaaccagctaagacattatttaactttactgtcaaggaagttggaa
aaacagaagctacttgtgagagtgattgtgtcagtacttgataatttccactttgacttg
agtaagtcaacattgaatgttaagaatacaccagtacctaaagtagagagggagcccgag
gagaaacccagcatacaacctgatcaggtggatttacagaaagatgaagaaactgcaaca
gaagatgctgaagaacctgtaacagagataaatgaggaaggggagactactgaggtagaa
ctagataaagggaaacaactctgttctgaaccattagctaccaagatacatggaactatt
ttgaaaagtgttatacatcagttacacagaattctagtacagaaggcacggagtgatgga
gagcataaaattgtgaaatcaaagtatgctgaggatgaggagattctgagagtgcctata
gctcttgccatggtgaaattgttacagaatctgcctagaggggcactgggaaggtacctt
ccagggatcttgctgaaagtttgtaacttcctcaagtcaaggtctatagagataaggaac
acgtctcgagacacactagtcaagatacagaccacgctcggtccacggttcttcccgttt
atcttgtcggaactgcgtggaaccctgagacgtggataccagcgtcacgttttgtgttac
acagttcatcagttgttgaagcatatggagtcagtggttagacctggcgatattgacatt
tgtctaaagaatctacaggaggtattgaatgaggagatatttggtgaggtatcagatgag
aaggtcgtagcagggatcaaggccaaggtgtttgaggcaagaagcagtaaaagttacgag
tcatacgagtttatcgctcggtacatcagtcctggatctttgatgaaatttctagaacca
atcaagaagattctagattcaaccagtagtcacaagtcagctaggaaggttcatgaagtt
ttgaagcgtgttactgctggtctccttgacaacaagaatgtcaccacagaaacactgcta
gtgtttgttcatggtttaaccacccagactttacctatgctgtccgaagagaaagttgca
cctaaggtagagaataccaagaaccagccaggaaaacagcctcccagttgtcttctaata
cctaaagctgctccccgtggtggtctgaaacctaaagctagcaagaaaaccaacaaacat
gtacttgtggaatttggactacaactgttgagtatgtgtttgaaaaagcagaagattgtg
aagacagacagttcacacctccagatgttagatcctcttgtagctatgttagcggactgt
ctctactccaaatatgtcttggtgaatgcaaacagtcttagagtactttgtaagattttg
aagtttccaattccgtctttagaaacgcacatctctaggatctccagtggaatgtttata
ttactccgcaattatgcctctgctggagcagcaaggggagataatttggagctggtctcc
atgctatttaaggcaattacagtgttagtgagagaagtgaaattttacaatctagagcca
ggtcagctgcaggttctgctgacattctgtgaggaagatattcatgactttaatagacaa
agtactgctttctcattgctcaaggcaatattgtcacgtaaacttgacataccagagata
cacgagttgatgaagaaagtggaggaaatgtcaatctcagctgagaccgcccatgttcag
agagaatgtagacaggcaatgatgcagtatttactggattatcgacatggtaagaagtta
agaggtcatctacagttctacgtctctaacctcaccttcgagctggagactgggcgagaa
tcagcgcttgaaatgttggcttccttcttcacatcctttccacagaatttgttagctgaa
tattcgggtttattctttgttcctatggcagccagtttagccaatgatgagtcagcaaaa
tgccgaaaattaattgcgcttgccataaagactttgttgggaaaacttgagcataattct
agaaccagtctgtttggaattgccttgaaatggtttatggatgagaagttaagacacaga
agcctggcagcccagttatgtggcttatttgtagaggtagagagtgctcagtttgagtcg
aggttgtcagatacacttcctgtgatagaacaacagttagagccaggcaaatataaacag
gttgattcagcatcattagaacacgaccaggatctgatgatatatcacacattgaacact
ctactgaagattctcagggaatgtagtcagctggttaccagctcgaaatgggaaaccaac
atgaatgttatatgggagcatgtcgtgacctacctgagctatcctcacatctgggtacaa
cttgctgcatcacagctgtttggcttgttgtttgctgcttggcctccagatcagctggta
accaaggcaaccaaatcatctacccagtatataagtgtagacacatacaaaaagctgagg
actctgtcaggtgattttctcacacaactacagtcagaacttctcaatgacgagctagct
agtcaggtgataaagaatatgatattcctgacgaagtgtgcgagatatatgtcccagata
gagcaggaacctggggagggggaggaagaggataaggttaaaggtctatctgtactctgg
ttggtcagaaagatggttagagaggccaatcatgaggccataaataacaataagatgaca
ataaagagaatacatgtattcaagtggcttgcagcagtggcattagacattggtgacact
atggaaactaacgtgttaaatgccatgttacctcccctgcagagagaactcaatgatcag
tccatgtatcaagatgcaagtttaaggagcctggctcaagaggtagtagatttattgaag
aaaacagtaggagtggagaagtttacaggttcctatgctagcacacagaaagtacgagcg
gagaggaaagatgagaggaaaagacagagagcagtccaggctgttgctaatccagagttg
catgcaaagagaaagttaaagaagaacttgaacaagatagaggcaaaaaagagaaaaatt
gaacatttcaagccttctaagaaagcaaagaagagaaaatatcaggaatttgctataaca
gactaa
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integrated database retrieval system
