Mercenaria mercenaria (northern quahog): 123553762
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Entry
123553762 CDS
T07835
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer04382
Cornified envelope formation
mmer04512
ECM-receptor interaction
mmer04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123553762
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123553762
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
123553762
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mmer04147
]
123553762
00536 Glycosaminoglycan binding proteins [BR:
mmer00536
]
123553762
Exosome [BR:
mmer04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
123553762
Glycosaminoglycan binding proteins [BR:
mmer00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123553762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
123553762
NCBI-ProteinID:
XP_045199317
LinkDB
All DBs
Position
7:83469873..83542075
Genome browser
AA seq
1764 aa
AA seq
DB search
MKPTGLIHYTLPCLILFSWILDVSYGAACKGCASSVCICKGLKGYPGAVGLPGLRGSQGF
PGFPGPEGPMGKRGLRGDQGEIGAEGPKGIRGDTGLPGFTGVPGTPGLEGIEGPVGERGY
DGCNGTKGYAGLPGVNGLPGRPGPRGRDGRPGPKGDIGDAGIFGVSQKGEPGEAGLDGFP
GLQGFPGRPGTQGQTGPRGPPGERGSDGLDGAMGPPGDTQELSPKGSPGDLGDIGERGDP
GEPAGFEGNPKDRVFLKGFKGRDGMKGAPGEEGPRGLPGLPGNDGRPGEPGTKGPKGEQG
SPGRLGKRGKDGPPGPYGLKGMEGEGGRPGIPGLPGLKGPQGDRGYQGLPGDVGEIGIKG
EEGGGRGLKGLRGVEGLPGPKGYNGLQGYPGEPGPPGFGGPVGPPGLDGLPGEPGDRGYS
VKGIRGDNGMPGVDGLPGRDGEPGYDGSVGEPGEPGETVFGPEGFPGLPGRDGRPGLPGY
PGDAGLTGAPGIPGRGIDVTGPRGVPGFPGDRGSPGDDGRDGEPGVPGRPGRRGDDCPFC
PNGIPGLKGEPGNPGYPGEDGYRGFQGNPGRKGEQGDNGLPGLPGLEGRTGTPGEFGSDG
LPGPPGDDGIVIIPPGRIGEKGETGNPGEIGVDGLRGPQGLPGPRGDFGPPGPEGLKGKP
GVPGLDGLDGIPGVRGTPGYKGMMGDFTDGEPGRTGPKGFDGFNGTPGSKGQRGEKGSPA
PDVDFEPIRGDRGEPGPPGLRGMDGLPGLMGMKGSPGFPGEPGREGEPGVLGEDGRNGVP
GFRGQDGAKGYPGLPGDAGPNGRPGEPGRPGPDGFPGTRGPKGMVGEPGRFFGQLLPGPR
GESGRPGFRGLDGVPGGPGTDGLPGRPGPKGMEGDYGRDGRPGLPGRKGEPGDFFQGPPG
YKGEPGAPGEPGLNGLNGIRGNDGLPGFPGSKGMAGDNGFRGADGRDGEPGLNGASGPKG
YPGFGGNPGLKGSPGEMGRPGTPGPKGIDGINGEPGGRGISGEEGIPGLPGREGLNGIKG
EPGNAGFPGREGFNGLDGAPGRKGMVGEPGLQGLDGRAGEPGLPGIPGEKGEIGERGRSI
DGEPGRPGSPGPDGTDGRNGFPGVKGRPGEMGLPGLDGMRGEPGLNGRDGEQGGTGQPGS
KGGRGNDGLPGFPGQKGRRGYDGLSGRPGLPGQKGESGLDGIRGEPGRQGEVGDVGYPGR
PGMFGLDGVKGRPGERGGDGLVGRDGEPGLPGISGPSGQDGMTGLPGLPGLPGLGGIKGI
QGDTGFDGFPGAPGENAPGGLPGLTGEPGLNGLPGLPGQDGMVGDRGLDGLPGLPGMPGE
AGYGYGGAKGVRGVDGLSGLPGQRGEKGFPGRSGLFGLNGMKGEPGYNGEQGGFGRDGPP
GFKGFPGDRGLEGFPGRKGEKGNDGLPGFTGPKGIRGNNGLDGFFGLRGDNGSKGMKGEP
GPILISEKPPRSYGEKGDRGLPGLAGMDGLRGLPGLPGLDGLQGEKGIRGFEGEPGLRGM
KGEQGDDGFPGLRGRDGNVGPPGEVGLPGFDGLSGSGPGLFFARHSQQTYVPDCPSGTSK
VWDGYSLSYVVGNQRAHSQDLGQPGSCLRRFSTMPFMFCNINNVCNVAWRGDYSYWLSTP
EPMTAMMDPVEGAQIEPYISRCVVCEAPSEIIAIHSQTMRIPDCPIGWTGLWIGYSFLMG
TGAGGDGAGTDLASVGSCLEDFRATPLIECHGRGTCNYYSTSTSYWLATIDSNAQFRTPL
SETLKAGNLRMRISRCQVCMRFSR
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgacaggtttaatccattacactcttccgtgcttgatattattttcttggata
ctcgacgtttcttacggagcggcttgtaaaggttgcgcatcatcagtatgcatctgcaag
ggcctgaagggctatccaggagctgtaggacttccaggtttgagaggatctcagggtttt
ccaggcttccctggtcctgaagggccaatgggaaaacgaggtctacgtggtgaccagggt
gagataggagccgaaggaccaaaaggaattagaggagatacaggtttacctggcttcact
ggcgtacctggaacacccggtctggaaggaattgaggggcctgtaggagagaggggttat
gatggctgtaatggaacaaagggatacgcaggattaccaggagttaatgggttaccaggg
cgaccaggtcccagaggtcgtgatggaaggccgggtcctaagggagatatcggagatgca
ggaatatttggtgtctctcagaaaggagagccaggagaggccggacttgatggatttcct
ggtttgcaaggatttcctggaagacctgggacacaaggccaaactggacctcgtggaccc
cctggagagaggggttctgatggactggatggagccatggggccaccgggagatactcaa
gaattatcaccaaaaggatcacctggagatcttggagatataggcgagcgaggagatcct
ggggaaccagctggatttgaaggtaatcccaaggatagggtattccttaagggatttaaa
ggacgagatggaatgaaaggggcaccaggagaggaaggaccaagagggttaccaggacta
ccaggaaatgatggccgaccaggtgaaccaggaacaaagggcccgaaaggtgaacagggc
tccccaggaagactgggcaaacgtgggaaggatggtcctccaggtccctatggtctgaag
ggtatggaaggagaaggtggacgcccaggtattccgggacttccaggactaaaaggacct
cagggagacagaggttatcaaggattaccgggtgatgttggtgaaattggtattaaagga
gaggagggaggtggcagggggttgaaggggcttcgaggagttgaaggtttacctggacct
aaaggttacaatggattacaaggttatccaggagaacctggacctccaggctttggtggt
ccggttggtccaccaggtttagatggattacctggagaaccaggagatcgtggttattcc
gtcaagggaatcagaggagacaatggtatgcctggagttgatggtttacctggtagggat
ggtgaacctggatatgatggatctgttggtgaacctggagagccaggagagactgtgttt
ggaccagaaggatttccaggtctcccaggacgtgatggaagaccaggtctgcccggatac
cctggtgatgctggacttactggtgctcctggtattcctggaagaggtattgatgttact
ggaccacgcggtgtgccaggattccctggagatcgtggatctcctggagatgatggacgt
gatggggaaccaggagtgccaggaaggcctggtcgccgtggtgacgattgcccattctgt
ccgaatggaattccagggctgaaaggggaaccaggaaatccaggatacccaggtgaagat
ggttatagaggtttccaaggtaatcctggtcgcaaaggtgagcagggagataatggtcta
ccaggacttccaggtctcgagggtcggacgggtacaccaggagaatttggaagtgatgga
ctcccgggtccaccaggagacgatggtatagttattattccaccaggaaggatcggggaa
aagggagaaactggaaatccaggtgaaattggagtggatggtctacgtggtccccagggt
ttacctggacccagaggagactttggtccaccaggacctgaaggtctcaaaggtaaaccg
ggtgtaccaggacttgatggtctggatggaatacctggtgttcgaggtacacctggatat
aagggtatgatgggagattttactgatggtgaaccgggacgcacaggacctaaagggttt
gatggatttaatggaacaccaggaagtaaaggacagagaggcgagaagggttccccagca
cctgatgtggattttgagccaatcagaggggatagaggtgaaccaggtccccctggacta
cggggtatggatggtcttcctggactgatgggtatgaaagggtcacctggatttcctgga
gagcctggtagagaaggggagcctggagttcttggtgaagatggcagaaatggtgtgcct
ggttttaggggccaggatggagccaagggttaccctgggttgcctggagatgctggaccc
aatggcagacctggagagccaggtagacccggacctgacggattcccaggcacaagagga
cctaagggtatggtgggagagccaggaagattctttggacagctgttgcctggccctcgt
ggagaatcagggcgcccaggatttaggggacttgatggtgtaccaggaggcccaggaaca
gatggattaccaggacgaccaggacctaaaggaatggaaggtgactatggccgagatgga
cgtcctggcttgccgggacgaaagggagaacctggagatttctttcaaggaccgcctggg
tacaaaggggaaccaggggctccaggagaaccaggtcttaatggtctaaatggtatccgt
ggaaatgatggccttccaggatttccagggtcgaagggtatggcaggtgataacggtttt
aggggcgccgatggacgagatggagaaccgggcttgaacggggcaagtggtccaaaaggt
tacccaggatttggtggaaacccaggtttgaagggatcaccgggtgagatgggccgacca
ggaacgccgggtccaaaaggtatagatggtatcaacggggaaccaggaggaagaggtatc
tccggtgaggaaggtattcctgggcttccaggacgggaaggtttgaatggaataaagggt
gaacctggaaatgctggtttccctggccgtgagggtttcaatggtttagacggggcacca
ggcaggaaaggcatggtaggggaaccagggctccagggtcttgatggacgtgcaggggaa
ccaggtttgcctggtataccaggagaaaagggagaaattggagaaagaggacgctcaata
gatggagaaccaggtagacccggctccccaggaccagatgggactgatggacggaatgga
ttcccaggtgtaaaaggtcgccctggagaaatgggcttgccaggactggatggtatgagg
ggagaacctgggctcaatggtagagatggtgagcaaggtggcactggacaacccggcagc
aaaggtggcagaggcaatgatggcttaccaggattcccaggtcaaaaaggccgcagaggt
tatgatggcctatctgggcgccctggacttccaggtcagaagggagagtctggtttagat
ggcatccggggcgaacctggtcgtcagggagaagttggtgatgtcggttacccaggtcgt
ccaggaatgttcggacttgatggagtcaaaggtcgccctggagaaaggggaggggatggg
cttgtagggcgggatggagaaccaggtttgcctggaatttctggacccagtggtcaagat
ggtatgactggacttcctggtctcccgggactaccagggttgggtggcatcaagggcatt
caaggagacacaggttttgatggattccctggtgcaccaggagagaatgcccctggagga
ctgcccggactgacaggtgaaccagggctcaacggtttaccgggacttccaggacaagat
ggtatggttggtgacagaggacttgatggtttaccaggtctccctggtatgcctggtgaa
gctgggtatggttatggtggtgctaaaggtgtaagaggtgtagatggtctgtcaggactg
cctggtcagcgtggtgagaaaggtttcccaggacgatcaggattgtttggtttgaacggt
atgaaaggtgaaccaggatacaatggagagcagggtggctttggcagagatggtcctcct
ggattcaagggatttcctggtgacagaggtttggaaggcttcccgggacgtaaaggagag
aagggaaatgatggtttaccaggattcactggtcccaagggcataaggggaaataatggc
cttgatggcttctttggcctccgaggagacaatggaagcaaaggtatgaagggtgaacct
ggaccaatcttaattagtgaaaaaccacctagatcctatggtgagaaaggagatagagga
ctgcctggattggctggaatggatggtctgagaggattgccaggtctgcctggtttggat
ggtctccagggtgagaagggtattcgtggatttgaaggggagcccgggcttagaggaatg
aaaggtgaacaaggagatgatggtttccctggtttgcgcggtcgagatggaaatgtcggt
ccacctggtgaagtgggtctccctggttttgatggtctgagcggtagtggacctggtctc
ttctttgcaagacatagtcagcagacatacgttcctgattgtccctcgggtaccagcaag
gtgtgggacggatattctctctcatatgttgtcggaaatcagcgtgcacactcacaagat
ttaggtcaaccaggaagctgtttacgacgtttcagcacaatgccattcatgttctgtaat
atcaacaatgtgtgcaacgtagcttggcgtggtgactacagctactggctgtccacacct
gaacccatgactgccatgatggatccagtagagggcgcccagattgaaccttacatcagc
agatgtgttgtttgtgaagctccgtctgagattatagctatacacagtcagacaatgagg
attccagactgtcctattggctggactggtctctggattggatacagtttccttatggga
actggtgctggtggcgatggagcaggcactgatcttgcatcagttggttcttgtcttgaa
gatttccgtgccactccactgattgaatgtcatggtcgtggaacttgcaactattattct
acgtcaacaagttactggctagccactatagatagtaacgctcaatttagaacaccatta
tcagaaactcttaaagcaggaaatctaagaatgagaataagtcgttgtcaagtgtgtatg
agattctctaggtaa
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