Mercenaria mercenaria (northern quahog): 123554061
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Entry
123554061 CDS
T07835
Name
(RefSeq) uncharacterized protein LOC123554061
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123554061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmer03041
]
123554061
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123554061
Spliceosome [BR:
mmer03041
]
Complex C
Other components
Step II factors
123554061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
IBR
RRM_1
OB_NTP_bind
DEAD
zf-RING_2
AAA_22
zf-RING_UBOX
nSTAND3
HA2_C
ABC_tran
zf_CopZ
zf-RING_11
AAA_30
Motif
Other DBs
NCBI-GeneID:
123554061
NCBI-ProteinID:
XP_045199869
EnsemblRapid:
LOC123554061
LinkDB
All DBs
Position
7:complement(63047171..63085335)
Genome browser
AA seq
1940 aa
AA seq
DB search
MDEESRNEDMSSAKKDKSVPKEKPTTDLKAEAGACGGYEGESEKEDKKRKGYSRRRHQSE
AESAQRDKNTDQSLGARPKEIKSGTYYNRRYARKGSFDSRMPTGCNQNETKYQRDKCVYV
KYDKKHVEKSHTDLKDKHADSYKGNAKSGEDKTQKIKFKDTRSQRNKENTPRYVKQKCFD
TYSSKGELHKTTAGHIDNWSKGDKRKNTKANIQTSVESDDRKNANVQKKQISSKVDNQVG
TEQRFENGGKTFQSKGPLNPSASHKHLAKETYLYVVVNDKVRNTSNLKNFLLHRMGNPKA
LDFEVTDTCGIRKSDSESSIISVKFESFNKASVARHMLNRNNKNAEHKIQCFFDKREAEG
LEVDTTKQKKDDLERAFIKIVELAKNGLDKHNDKIRDVRASLSVVEERIGKKRGVSFYEF
EKLSNEKLAFEDKLEELEGQRKEFTRYLQSMKLKLNTLIDCDKFEHELKEIRKAFGVECQ
RLAAALPMYARREDILTIIKDNQVCVILGETGSGKSTQMVQYIYQAGFAADGLIACTQPR
KIAAVSLAIHVSSELASSVGQVVGYKVGMQTKMTAVTKVVFMTDHILLNECLKDRMLTQY
SCILIDEAHERSIHTDLLLGMLKEALNSRPDLRVVITSATIDPDIFVDYFGGYDHCPVLK
VSGRTFPVDVFWEQDDYFDTPFPEDYERKALNKAIEIHQSEKTEGDILVFLTAAVETDRC
TEKLKKMIGEADVQCLQLHGRLKTEEQQLVFEKTPRGKRKIVFATNSAETSITIPGIKFV
VDTGVVKEMRFDPKKNMNSLDVVSVSQSSANQRKGRAGRTSSGICYRLYTLEDYKRMDRA
ASPEILRIQVSQAMLKLMELGVDPISFDYVQSPSQAAMISALDELKEIGAVDDAGISELG
KWIAKLPVEPKLGAFIKKGVEMEITTEALVVASCCNQSGIFFRVGTQEEKKEADARKMKF
CHLGGDLLTMLNVYREWDKVQERAKGKWCQTNSINGKAMKGVRDMMNEMITVLKKELELK
IKHEFKDPQEADSRVQNLIFECMTSKLGYYLGHESAGYLIVNRLQRVQLHPSSAVLSLGF
EPSWVVFNRVLKTSADFMTEVTPVLDDVVEDAIQKGKVCIDMELLMSLKVKRVLKMPVGK
HVFWKFVGPMHKNRRKVEEDIRMACDGSLIIVEADKQRGEISVFCTVEHEDQASAMLRSI
LEAAPQQLLNESREEPIGNDKSSVRAVLREGGSAVDILMPNDYRVLNIKQKDNSMYDLDE
ESVRTMLEEYGPVEQIWQTTGKKQSQSPFWGKVTFTHKLDAEDAVEDINKDDECEIRLIP
ISHESQTSAPQQGFTMKLTWCRRPGKGHCFVYLDRPEDMSQLLLTPPMINGTYVQVSLSK
QQSDLFIKGLSRDVTEDEVKDGLARVIGLSLDECRDRFRVIIARHIAPWSVDQRFHVQDE
LATIMSRYTQRDSFRVHVREYKQQTVMCIAFASFSDPQVCYDTANAMTDDGTDIDGHPID
ITLECKATVHVNRKLYNIVGQDVKRLVDRYVHKNSSTTLKIRDLKSGNFSVDIKAITPQK
LAKVKVQVETVVGGDTLECGEKENMQSFFTKDGRQQAQRIEKATRTLIFVDERQMKISIQ
GLALDRVQAIQMIDDYISKNANAMESEVRLKGEENPPGLLKALLVKYGLRFDDLKKDTGI
SKVFFNLRSHEITLTGKEEDIKKAQDKIKEIRAELTAREKVQIQEAELPDCPICLCPVEE
SDMCRLEYCGHAYCKVCLASQIQAAVSDRQLPVVCAVEDCNKALVIRDINTQIKIGNIKR
KALLDAAVASLVVKNSEEFHYCITPDCEVVYRVTTNGELFYCPACRTKICTSCHSQSHEG
LTCAMYKSAKRDGESIVKWLRVDPTNRKLCPKCGIGIEKSAGCDHMECKCGAHICWKCLE
YFSSSGGCYGHLSRAHDSFV
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaatcccgaaatgaagatatgtcaagtgctaagaaagataaaagtgtaccg
aaagagaaacctaccactgatttaaaagcagaggctggagcttgtggaggttacgaaggt
gaatcggaaaaggaagacaagaagcgtaaaggttacagtcgaagaagacatcagtctgaa
gcagagtctgcacaacgagataaaaatactgatcagagtcttggagcgagaccaaaagaa
attaaatcaggaacttactataacagaaggtatgctcgaaaaggttcttttgatagtaga
atgccaacaggctgtaatcagaatgaaaccaaatatcagagagacaaatgtgtctatgta
aaatatgacaaaaagcatgttgaaaaatctcatactgacttgaaagacaaacacgcagat
tcttataaaggaaatgcaaagagtggcgaagataaaacgcagaagataaagtttaaggat
accagatcacagaggaataaagaaaacactcctagatatgttaagcaaaaatgttttgat
acatattcaagtaaaggtgagctgcataaaactacggcaggtcatattgataactggtca
aaaggagacaaacgtaaaaataccaaagcaaacattcagacaagtgtcgagtcagatgat
agaaagaatgcaaatgtacagaagaagcagatttcgagtaaagttgataaccaagtaggt
acagaacaacgatttgagaatggaggaaaaacgtttcaatctaaagggccgctgaacccg
tcagcgtcacataaacacctggcaaaagaaacctatttatatgttgttgtcaatgataaa
gtccgcaacacaagcaatttaaaaaacttcttgcttcatagaatgggaaatccaaaagct
cttgacttcgaagttacagacacttgtgggatcagaaagagtgactcagaaagtagtata
atttcagtgaaatttgaaagttttaacaaagcgtccgtagccagacatatgctaaacagg
aataacaaaaatgctgaacataaaatacagtgcttctttgacaagagagaagcggaaggt
ctagaagttgacacaacaaaacaaaaaaaggacgacctagaaagggcatttataaaaata
gtggaattagcgaaaaatggtttagataagcacaatgataaaattcgtgatgtccgtgca
agtctttctgttgtagaagaacgcattggtaaaaagcgcggagtctccttttacgagttt
gagaaattatcaaatgaaaagcttgcatttgaagataaattggaagagttggagggacaa
agaaaagagttcacaagatatttacagagtatgaagttgaaactgaatacgctcattgac
tgtgacaagtttgaacatgaactgaaagagataagaaaagcgtttggtgttgaatgtcag
cggctggcggctgcactaccgatgtacgcaaggcgagaagacatattaacaatcatcaaa
gataatcaggtgtgtgtgatactcggtgagactgggtcgggaaagtctacacagatggtc
cagtatatatatcaggctgggtttgcagctgacggacttattgcgtgtactcaacccaga
aagattgctgctgtcagtcttgcgatacatgtatcctcagaacttgcctcaagtgttggt
caggtcgttggttacaaagttggaatgcagacaaagatgacagcggtaacgaaagtagtg
tttatgactgatcatatattactaaatgagtgtttaaaggatcgaatgttaacacagtac
tcatgcattcttatagacgaagcacatgagcgaagtattcataccgacttgcttcttggt
atgctgaaggaagccttaaacagtagaccagatcttagggttgtaataacttcggcaacg
attgacccagatatctttgtggattattttggcggctatgatcattgtcctgtactgaag
gtttctgggagaacatttcctgtagatgtattctgggaacaagatgactattttgatacc
ccatttcccgaagattatgaaagaaaggcgctaaacaaagcaattgaaatccaccaatct
gagaagaccgaaggtgacatactagtatttttaacagctgctgttgagacagataggtgc
acagaaaaacttaagaaaatgattggagaagcagatgttcaatgcttgcagctacacggt
aggcttaaaacggaagaacaacagctggtttttgagaaaacgccgagggggaagcgaaaa
attgtttttgctaccaatagcgctgagacgtcaattaccattccaggtattaagtttgtt
gtagatactggtgttgtaaaagaaatgaggtttgatccgaagaaaaacatgaattctctg
gatgtggtatcagtcagccaaagctctgctaatcagcgcaaaggacgtgcagggaggact
tcgtcaggaatttgctacaggctttatacattagaagactacaaaagaatggatagggcg
gcaagcccagaaattcttcggatacaggtttcacaagccatgcttaaattaatggagctt
ggagtagatccaataagttttgattacgttcaatccccatctcaggcggccatgatatca
gctttagatgaactgaaagagatcggtgcagtcgacgatgccggtatatctgaacttggc
aaatggattgctaaattgccggttgaaccaaaacttggagcttttataaagaagggcgta
gagatggaaatcactacagaagctcttgtagtggcatcatgttgcaatcaaagcggaata
tttttccgagttgggacacaggaagagaaaaaggaagcagatgcaagaaagatgaagttt
tgtcatctaggtggagatttactcacaatgttgaatgtatatagagaatgggataaggta
caagagagagcaaaaggaaaatggtgtcagacgaatagtataaacggaaaagcaatgaag
ggtgtcagggacatgatgaatgagatgatcactgtgctgaagaaggagttggaattaaag
ataaaacatgagtttaaagatccacaagaagcagatagtcgcgtacaaaatctcatattt
gaatgcatgacatcgaaactaggttactaccttggacacgaaagcgcaggatatcttatt
gtgaataggcttcaaagagtccagttacacccgtcttcagcagtattatctctaggcttc
gaaccaagctgggtcgtttttaacagagtcttgaaaacttccgcagattttatgactgaa
gtaacacctgtgctagacgatgtggtcgaagatgcaatccagaaagggaaagtttgtatt
gacatggagttacttatgagtctgaaagttaaacgtgtcctaaaaatgccagtaggcaag
catgtgttttggaaatttgttggaccgatgcataagaacagacgaaaagtagaggaagac
attagaatggcatgtgatggttccttaattattgtagaagcagataaacaacgtggagaa
attagtgtattttgcacagtcgaacatgaagatcaggcatctgctatgcttcgctcgata
ttggaggcagcgccacaacaattactcaacgagtcacgcgaagaacccatcggtaatgac
aaaagtagtgtacgtgctgttctacgcgaaggcggctcagcagttgatatacttatgccg
aatgattatagagttttgaacataaaacagaaagacaattctatgtatgatcttgacgaa
gaaagcgttcgaacaatgcttgaagaatatggaccagtggaacagatatggcaaacgaca
ggtaaaaagcaaagccagagcccattctggggtaaagtgacattcacacataagctcgac
gctgaagacgctgtggaagatataaacaaggacgacgaatgtgagataagattgatacca
atttcgcacgaatctcagacctctgcaccacaacagggtttcactatgaagctgacatgg
tgtagacgaccgggaaaaggtcattgttttgtatatttagatcgaccagaagacatgtca
caacttttactgacaccaccaatgataaacggaacgtacgttcaagtttcgctttcgaaa
caacagtcagatttattcattaaaggattatctcgagatgtgaccgaggatgaagtaaaa
gatggactggctcgtgtcattggactttctcttgacgaatgccgagatagatttcgtgta
attattgctcgacatattgcaccttggagtgtcgaccaaagattccacgttcaggatgaa
cttgcaacaataatgtcaaggtatacacaacgagattcatttcgtgtacatgttagagaa
tataagcaacaaaccgtcatgtgcatagcatttgcatcgttttcggaccctcaggtatgc
tacgacactgcgaatgcaatgactgatgatggtacagacatagatggacatcctattgat
atcactttagagtgcaaagcaacggtacatgtaaacagaaaactgtataacatagtcgga
caggatgtaaaacgccttgttgacagatatgtccacaagaactcgtcaacaactttaaaa
ataagagatctaaagtcaggtaacttttcagtggatattaaagccataacaccacagaaa
ctagcaaaagtaaaagttcaagttgagacagttgtcggcggagatacgcttgaatgtgga
gagaaggaaaacatgcagtcttttttcactaaagatggaaggcagcaggcccagcgtata
gagaaggcaacacggacactcatcttcgttgacgagaggcaaatgaagatatctattcaa
gggctagctttagatagagttcaagccatacaaatgattgacgattatatttcaaaaaat
gcaaatgccatggaatcagaagtccgtttaaaaggcgaagaaaatccacccggactatta
aaagctctgctagtaaaatatgggttgcgttttgatgacctgaagaaagacactggcatt
tcaaaagtatttttcaacctacgttcccatgaaattactctcactggaaaagaagaagat
attaagaaagcacaagacaagattaaagaaatacgggcagaattgactgcacgtgaaaaa
gtacaaattcaagaagcagaattaccagactgcccaatatgtttatgtcccgttgaggag
tcagacatgtgccgacttgaatactgcggccacgcgtactgcaaagtttgtctggcgtca
cagatccaggctgctgtgtccgatcgacaactgcctgttgtatgcgccgttgaagactgc
aacaaggccctagtcataagagatatcaatacacagataaagataggtaacattaagaga
aaagctcttctagacgccgctgtggcatcgttagttgtcaagaacagcgaggagtttcac
tactgcatcactcccgattgtgaagttgtttatcgagtgaccactaatggcgagctgttt
tattgccccgcctgtcgcactaaaatctgtaccagctgtcattcacagtcgcatgaaggt
cttacatgtgccatgtataagagcgcaaaaagagatggtgaatctatcgtgaagtggctg
agagtagatccgaccaatcggaaattatgcccaaaatgtgggattggaatcgaaaagtca
gctggatgtgaccatatggaatgcaaatgtggagcacacatatgttggaaatgtctagag
tatttttcaagtagtggtggttgctatggtcatctaagtcgtgctcatgacagtttcgtt
taa
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