Mercenaria mercenaria (northern quahog): 123554063
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Entry
123554063 CDS
T07835
Name
(RefSeq) uncharacterized protein LOC123554063
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123554063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmer03041
]
123554063
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123554063
Spliceosome [BR:
mmer03041
]
Complex C
Other components
Step II factors
123554063
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
RRM_1
Rcat_RNF216
KH_1
AAA_19
AAA_22
IBR_1
zf-RING_UBOX
AAA_30
zf-RING_2
zf-C3HC4
KH_DEAH11_2nd
KH_DEAH11_1st
nSTAND_NTPase5
AAA_16
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
123554063
NCBI-ProteinID:
XP_045199872
LinkDB
All DBs
Position
7:complement(63003800..63037604)
Genome browser
AA seq
1742 aa
AA seq
DB search
MEHQKQSQKTPSSDTGKASKDSQMQKKQGESVGGKRENKGRTRNVEKEKDVNKVRPFKIN
AKETYLYVIIPEQCSDKSKLEPFLHYRMGNKDASTMKFCLTDLMPVRLSNKSCSLVTLRF
ESSKKAAAATNLLHKSNQNSSSKIRCYSSKFEALGEKDPVDAERACVLEEAFKEIVETAS
RTALKHDEKLTKARDNLKEIEMVLGKEKGLSPAEFEKLTNEKLAVEDKFLELERQRREFN
GFIQNMKTKLNGIIHFEKFDKELKEIRKYFGVECRRLDAALPMYARRTDILNTIRDSQVS
VILGETGSGKSTQMAQYLYQAGFLSGGFIACTQPRKIAAVSLATRVASELSSGVGQVVGY
KVGMQSKTTAVTKIVYMTDHILLNECLVDTHLSKYSCVIIDEAHERSIYTDLLLGMLKQT
LSKRPELKVVITSATIDPDLFVTYFGGMEKCPVLKVSGRTFPVDVIWDGNNSETPFPDDY
MNKALNKAIEIHNSSSTEDGDILVFLTSPAETETCAGKMKRCVKENNVLCLQLHGKLKPE
EQQQVFAQTPSGKRKVVFATNSAETSITIPGIKFVVDAGVVKEMRFDAKKNMNSLDVVPV
SQSSSNQRKGRAGRTESGKCFRLYTDDDFCTMEKTASPEILRIQVSQAMLKLILLGVDPM
NFDYVQSPSREAMVSAMEELEEIGAAADRTITELGRWIAKLPVEPKLGAFIKKGIDRGFP
IEVLVVAGCSSQSGIFYRAGTAEEKKTADMRKMKFCHNDGDFLTALNVFREWDKINEKAK
GRWCTENSVNGKAMKGVREMMNEILSTLKKEFDFNIKHKFQPPDDADGVVKQLVFDCMMN
NLAIYLGHESAGYLIVKRMQRVQLHPGSALVSLGSHPEWVVFNRVLKTSADFMTEVTAVS
LSTIKEAVKSKRISIDINELEKQKIRLVLNMRLGKTVFWKFVGKNHSNRRKIEGDIQTKC
NQTPVVIEANKLLGVVSLFCLPEYAEQASGILRSILENMVLQILAESREESIGNRNSGVR
VVLREGGSVVDLLMPNQFRTLTIKVRGSSSMAEKNVRDVLEGFGSIANIWKRKGYGPVWG
SVTFAESNDAAAALSMINKDENRKIDLIPVTFENKASIGRDSRNQSFTIVITWCRRKAKG
LCFVTLKRPEDKAMLSTASAIINGSTLSVRLSKTQSDASKAQSDLFIKGLRPDTTEEHVK
EGLGQLLGVSLEDSNTRFGNIIIPRTDMPWSQDQNAQTQREISGLIQRFAGTDSFKVNVK
EFKQKTVKCIAFVTFSDWKTCFDTGERLRGNSQIDGSIVHARFECKANVFVAKRIFEIIR
EDMEQLIDKYKQKKSSTTVTSRQMKNENYCIEIKTLTPEKLAKGKCKVEKLVNGDTLDCE
KISKLEAIFNHDGRLKLKEIADKTGTIIFVDERRKKVIVQGSSEGKTNAVSMIENLIGAI
EILAEKVVRFKGKDNPPGLLKVLLRKYGMMFEKLKVETGVSSIHLNIRYHEVTLTGKEEA
IERALIQISKVRETMIQEGEHKTADSDFPDCPVCLCPVEETDISRLEYCGHSYCKFCLTS
QIQSAITNREFPIACAEETCNKPVAIRDLDAQVKGGNVTWEDISGASIACLVTRNTEHFK
YCITPDCGIVYRATEEVNMFACPVCNIKICTSCHNQFHEGLTCKENESAGTEDTSLEEWL
KEEPNLRKLCPKCGYAIEKISGCNRMTCKCGANICWKCLAFFETSGKCYDHLSKMHGGCF
DY
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggagcatcagaaacaatctcaaaagacgccttcctctgatactggcaaagcttcaaaa
gactcacaaatgcaaaagaaacagggtgaatcagttggcggcaaacgtgaaaacaagggt
cggactagaaatgtagaaaaggaaaaggatgtaaataaggttcgtccattcaaaattaac
gccaaagaaacatacttatacgttattataccggagcaatgttcagacaaatcaaaatta
gaaccgtttttgcactatcgaatgggaaacaaagatgctagtaccatgaaattttgctta
acagatttaatgcctgttcgtttaagtaacaaaagttgtagtttggtgacactgcgattc
gagagttcaaagaaagctgctgcagctactaatttattacataaaagtaaccaaaattca
tctagcaaaatccgttgttatagcagtaaatttgaagcacttggtgaaaaggatccagtc
gacgctgaacgtgcatgtgtactagaagaagccttcaaggaaatagtcgagacagcgtcg
cggacagcattgaaacatgatgaaaagttgacaaaagcaagagataatttgaaagaaatt
gagatggtgcttggcaaagaaaaaggactatctcccgcagaattcgagaaactaacaaac
gaaaagttagcggttgaagataaattcctagaattagagagacagcggcgagagttcaac
ggctttatccagaacatgaaaacaaaactaaacggtatcattcatttcgagaaatttgac
aaggaactgaaagagatcagaaaatattttggagttgagtgccgtcgacttgatgcagct
ttgcccatgtatgctagacgaacggatatattgaataccattagagacagtcaggtgtct
gttatacttggagaaactgggtctgggaaatctacgcagatggcacagtacctttaccaa
gcaggtttcttgtcaggtggctttatagcctgtacacaaccacgaaagattgccgctgtt
agtctagcaacacgtgttgcctcagaactttcttctggcgttggtcaagtggttggctat
aaggttggaatgcaaagtaaaacaaccgctgttacgaagattgtatacatgacagatcat
atccttttgaacgagtgtctagtcgacacacacctgtctaaatattcgtgcgtgatcata
gacgaagcccacgagagaagcatttacacggacttactcttgggtatgctgaaacaaact
ctttcaaaaagaccagaactgaaggttgtcattacatccgcaacaatcgatccagattta
tttgtaacatactttggaggaatggaaaaatgtccagtactgaaggtttctggaagaaca
ttcccggtcgacgtgatctgggatggtaataactctgaaacaccttttccagacgactat
atgaacaaagcgctaaataaagccattgaaatacataacagttcttcgacagaagacgga
gacatacttgtatttcttacatctcccgccgaaaccgaaacttgcgctggaaaaatgaaa
agatgtgtcaaggaaaacaatgttttgtgccttcaacttcacggtaaattgaaacccgaa
gagcaacaacaagtctttgcacaaactcctagtggaaaacgaaaagttgtgtttgccaca
aatagcgcagaaacatccattactattccaggaatcaaatttgtcgtcgacgctggtgtc
gtcaaggaaatgcgttttgatgcgaaaaagaatatgaattctcttgatgtcgtgcccgtc
agtcaaagttcatcaaatcagagaaagggaagggctgggcgtacagaatccggaaaatgc
tttcgattatacactgatgatgatttctgcactatggagaaaactgcaagcccggaaata
ttaagaattcaagtttcacaagcaatgttgaagctgatattgctgggtgtcgatccgatg
aattttgactacgtccaatccccatcacgcgaagctatggtttctgcaatggaggaattg
gaagaaattggtgcagcagcagaccgcactataactgaactaggaagatggatcgcaaag
ctaccagtagagccaaagcttggagcgttcataaagaaaggcatagatagaggatttcct
atagaggttctagttgttgctgggtgctctagtcagagtggaatcttttaccgtgctggt
acagctgaggagaagaaaaccgctgatatgaggaaaatgaagttctgccacaatgatgga
gactttctaacagcgttaaacgttttccgtgaatgggataaaataaacgaaaaagcaaag
gggagatggtgtactgagaatagcgtcaatgggaaagctatgaaaggtgtacgagagatg
atgaacgaaatcctgtctacattaaagaaagaatttgactttaacatcaagcataaattt
cagccccctgatgacgcagatggtgtcgtcaaacaacttgtatttgattgtatgatgaat
aaccttgcaatttatcttggtcatgaaagcgctggatacctcattgtcaaacgtatgcaa
agagttcagctgcatcctggatcggcactagtgtctctaggatctcacccggaatgggtt
gtcttcaacagagttctaaagacttcggcagattttatgacagaggtcacagctgtttca
ttatcaacaataaaagaagcagtaaaaagtaagaggatatcaatagacatcaatgagctt
gagaaacaaaaaatcagactggtcttaaacatgcgattagggaaaacagtcttttggaaa
tttgttggcaaaaatcattctaacaggcgaaagattgaaggagacatacaaacaaaatgt
aatcaaacgccagttgttattgaagcaaataagttattgggtgtagtatctctgttttgc
ttaccagagtatgctgaacaagcttcaggtatacttcgttctatccttgagaatatggtt
ctacagatacttgccgaatccagagaagaaagcattgggaataggaattcaggagttcgt
gttgtattacgagaaggaggatcagtagtagatttacttatgccaaatcagttccgaacg
ctgactattaaggtcagaggatctagcagcatggccgaaaaaaacgttcgagatgttctt
gaaggttttgggagcatagcaaatatatggaaaaggaaaggatatggtccagtttgggga
agcgtgacgtttgctgaatcgaatgacgctgctgctgctctcagtatgataaacaaagac
gagaacagaaaaatagatttgattccagttacttttgaaaacaaggcatctatcggtaga
gactcgcgaaatcaaagttttaccattgttattacatggtgtaggcgaaaagcaaaagga
ctgtgctttgtgaccctaaaaagacctgaggataaagctatgctttctacagcttcagcc
attattaatggttccaccctgtctgtcagactttcaaaaacccaatcggacgcatctaaa
gctcagtctgatttgttcataaaggggctcaggccagatacaactgaagagcatgtaaaa
gaagggttgggacaacttctcggagtatcacttgaagatagcaatactagatttggaaac
atcataattcctcgtacagatatgccatggagtcaagaccaaaacgcacaaacacaaaga
gaaatttcaggccttatacaacggtttgctgggacagactcattcaaagtaaatgtcaaa
gaattcaaacaaaagacagtcaaatgcattgcatttgttacattttcggactggaagaca
tgctttgacaccggagaacgtctacgtggaaattcacagatagatggaagcatcgtgcat
gctaggtttgaatgtaaggccaatgtatttgtcgctaaacgtatttttgaaattatcaga
gaagatatggagcaacttattgacaaatataagcagaaaaaatcatctactactgtcacg
tcacgccagatgaaaaacgaaaactactgtatcgagataaaaacattaactccggaaaaa
ctagccaaaggcaaatgcaaagttgaaaagctcgtaaatggagatacattagactgtgaa
aaaataagtaaattggaagccattttcaaccatgatggcagattgaagttaaaggaaata
gcggataagactggcacaatcatttttgttgacgaaagacgaaagaaagtaattgtccaa
ggttcatcagagggaaagacaaacgctgtctccatgatagaaaaccttatcggggctatt
gaaatattagcagagaaagtagtacgttttaagggtaaagacaatcctcctggattattg
aaagttctgctaaggaagtatgggatgatgttcgaaaagctgaaagtagaaacaggtgtt
tctagcattcaccttaatatacgataccatgaggtgacacttacaggaaaagaagaggct
attgaaagagcactaatacaaataagcaaagtgagggaaacgatgatacaagaaggtgag
cataaaacagccgattctgattttccagattgcccagtatgcctttgcccagttgaagaa
acagacatttccagactcgaatactgcggacattcgtattgcaaattttgccttacatca
cagattcagagtgcgataacaaaccgagaatttccgattgcatgcgcagaagaaacctgc
aacaagccagtagccatcagggatttagatgcacaggttaaaggtgggaatgttacatgg
gaagacataagtggtgcaagcattgcatgtttggttacaagaaatactgaacactttaag
tattgtattacgcccgattgtggaatagtgtatcgagcgacagaagaagtcaacatgttt
gcatgtccagtgtgtaatattaaaatctgtacaagctgtcacaaccagtttcatgaagga
ttgacatgtaaagaaaatgaaagcgctggtacagaagatacttcattggaagaatggctt
aaagaagaaccaaacttgcggaagttatgtccgaagtgcggctatgcgatagaaaaaata
agtggatgcaatcgaatgacatgtaaatgtggagctaatatttgttggaagtgtttagct
ttttttgagaccagcggaaaatgctatgatcatctgagtaaaatgcatggcggttgtttc
gactactaa
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integrated database retrieval system
