Mercenaria mercenaria (northern quahog): 123555468
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Entry
123555468 CDS
T07835
Name
(RefSeq) nucleoporin NUP188-like isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123555468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123555468
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123555468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
123555468
NCBI-ProteinID:
XP_053381027
LinkDB
All DBs
Position
15:complement(38347706..38422823)
Genome browser
AA seq
1770 aa
AA seq
DB search
MAQANESFGNRHLWQFISGTGILRPRELIKRELTRNTDKVLNGLLFYKKPRAPQGDLLKD
KNLKTQQKEFVLKLTTFLNLEEDQSYEVYFSYLSQDFRGSEKNLQLCLSTERHSHAFMVK
IRDFYYSERLYLLQCIRHILTFWSEAENHPYREEYTIFLNILLKDNELIKKLLEQVDLLC
DEPLPTWETHGNLMNDRQALVWAHQNLKEQIELLEILLVYWKEFEVSAKDFNRLLDKFKR
QGFGRRQTYKHILDESFDRITKRIGSLEVLVLLQAMDMETVERLSYTKCFDDHSLLKDKQ
TFQSVEKTMQLLGSEQPHGALLLSWAVIRQLYLEGDGANVTRKYGNQALQLCVFDFLSEM
LDREPFSGKSITASISHCVIYTVLLAALTAFDETTLTRSNTEMKVLYDITCKLLSREFIA
GNVWNKGMEQGVGNMYQTALLNFPLDFSTLVKLSTALASANADSASKVLELWSELPRYTE
YLDRNSSQDLRSTRDSLVWQLARDKTPYGAGDFRIPAGVYGQLISTGQKPVSDLDIPIIQ
WEVTYDGWQLLKSEIQELLHQVARGAGMVLPVQILRVTDIAQFVRAICKSQPTAADGLTD
IMVLLYTLIQRFSSFNPPPLELIAACVDCITYVAKLHPKQAWHDMKQTGLLPFLTENIDN
MTEVLSGRGLSPGLYGGLLAGFEVPQGEYQLTVAFLEFISELVMPLYNIGQENQLQPVVM
YILREIFPGFQKWRYYNSTRKELIGHKCLKIAHKILNFRLSKEKKNSEKPHIQKLCVYSL
LFTEAGRALLEIIATGVEPIEMLLAQQSSRTEGSGEDLMQLIQIGFSVMNRLLLLRSHDQ
LSPVEVALSSQPAGYQNQHIVAVIAEYIYHRTNPLLPKLATLFLRRLAVVLPMSILACLG
GQGEAIRDIYLMRLHSATEDLSLKTGILELLSVCVDTQPGLIELFLNVQTTQPSDANKDV
LVGRTSCLQTVLDLMLFKKQGSYQCPPDLLCACTNFIQALWVGMRETAMAALRAKVHFWP
SLCGPLLKDLSDASEEPMLTFKLKTVSYILKVLAQEIYVTNSTKLDDNLKKILKELAEKG
RIKYWSTYITDCIKMADEGSHDMSLDTSTDAAEHPIHKLLLAWKNFLVVLAKINVVELKL
DDGLKELIVVDLLEAIHAQFTNSLSELRHKLSQTCSALFFTLVKSWTSSIKVWRQVLDRT
LETLTLTMSSGDMIIPSVQIGLLGSVTAILQYLRLEAHKKVDVQKLGPILVSTCEVLLQS
TRELPQPQELRRLREAQESTEKSFAHTDHRLKLQTVACCTVEELIHHIRDSEIWLPILQE
NMILPALLSSADIYLKTQESLHYLQPLFILFLTIAQDKKGAESLAMAGLTQHVCLPVTYC
YQNGDVSYPGPKPGQQGKAVRPQQPQVTWHSVYCLCLDLYTTMLATMKYSFLEDAFNFVG
SHQDRLQQCLEIARFSLSSDMFREVEKTCLFVSHLANFSREWRLHLPESLNKILLSLLYM
CQTFVSLLIRPRYLQYILEHQGITGEQHERRHSERLPLPTLQHQASTEDIDSPTVQHVQV
QHSMLKVLGECFVALRQFSPDLVQILVDQNMDVGEYEPFLALGFSTPPADQDTPPTFGTM
LSCVSVGLRLLTKMDGSKSPQKQDSSTTASGTPVLSQHVSKSLVMFVLENALYLTMSQGM
LYLKDPNVQSREKQLLKRELGTEMNSILSGIQRYIRRGGPQSPASSTQISPRSQSPAGAT
LSRSISQTFLSSQDHAIFRLVQEFSKQVLR
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagcaaatgaaagttttggtaaccgacacttatggcagtttatcagtggtaca
ggcattcttcgaccgagggagctgataaagagagagttgacaagaaacacagacaaagtt
ctaaatggcctgctgttttacaagaaaccaagggcaccacagggagatttgctgaaagac
aagaatctgaaaacacagcagaaagaatttgtgctcaaattaacaacgttcttgaatttg
gaagaagaccagagctatgaagtgtacttttcatatctttctcaagatttcagaggctca
gaaaaaaatcttcagctgtgcttaagtacagaacgacacagtcatgcattcatggtaaag
attcgtgatttctactacagtgagaggttgtatctactacaatgtatcaggcacattctc
acgttctggtccgaggcagagaaccatccttatagggaggagtacactatatttctgaac
atattactgaaggataacgagttgataaagaaactgttagaacaggtcgacctgctgtgt
gatgaaccacttcctacctgggaaactcatggaaaccttatgaatgatagacaagctttg
gtatgggcacatcagaatttgaaagaacagattgaactgttggagatacttcttgtgtac
tggaaagaatttgaagttagtgccaaagatttcaacagattactggacaaattcaagaga
caaggttttggcaggagacagacatacaaacatatactggatgagtcctttgatagaatt
actaaaagaatagggtcactagaagttctagtattacttcaagcaatggacatggagact
gtagaaaggcttagttacactaaatgttttgatgaccatagtttgttgaaagacaaacaa
actttccagtcagtagagaagacaatgcagttgctggggtcagaacagcctcatggtgcc
ctgctcctcagctgggcagttatcaggcagctgtacctggagggggacggagcaaatgta
accaggaaatacgggaaccaggctttacagctttgtgtgtttgatttcctctcggagatg
ttagatagggaaccattctctggaaagtctattacagcgtctatttcacactgtgtgata
tatacagtattgttagcagcactgacagcatttgatgaaacaacattgactagaagtaac
acagaaatgaaggtactgtatgacattacatgcaagctgttgagtagagagtttattgct
ggaaatgtttggaataagggaatggaacaaggagtaggaaacatgtatcaaactgctctc
ctcaacttcccgctggatttctcaactctcgtcaaactgagtacagccctagcttcagct
aatgcagacagtgcatcaaaggtgctggaattatggtcagaattacccaggtacacagaa
tatctggaccgcaacagttcccaggacctcagatcaaccagggactccttggtgtggcaa
ctggctagggataaaacaccttatggggcaggtgattttcgcatcccagcaggggtatat
ggacagttgatttctacaggccagaaaccagtgtcagaccttgatattccaataattcag
tgggaggtgacctatgatggatggcagctgttgaaaagtgaaatacaagaactgttacat
caagttgcaagaggggccggtatggtattaccagtacaaatcctcagggtgacagatatc
gctcaatttgttagagcaatatgtaaatcccagccaacagctgccgacggtctcacagat
atcatggtgctgctctatacactgatacagaggttttcatccttcaaccctccgccatta
gaattgatagcagcctgtgttgactgtatcacatatgtagctaaacttcacccgaaacaa
gcatggcatgatatgaaacagactggtctcctgccattccttacagagaatatagacaac
atgacggaagtactgagtggacgtggcttgagccccggactgtatggaggtctgctggct
gggtttgaggtaccacagggagagtaccagctaactgtggcgttccttgagttcatatcg
gaacttgttatgccactgtacaatataggccaggagaatcagcttcagccagtagttatg
tatatactgagagagatatttccaggattccagaaatggagatattataattctacaagg
aaagaactcatagggcataaatgtttgaaaattgcacataagatactcaacttcagactt
tccaaggagaagaaaaattctgaaaagccacatatacagaagttgtgtgtttatagtcta
ctgtttacagaagctgggagagccttactggagattatagccacaggggtagaacctata
gaaatgttactggctcagcagtctagtcgaactgagggcagtggagaggatctcatgcag
ttgatacagattggattttccgtgatgaaccgtctgcttttgctgaggtcacatgatcag
ttgtcaccagtagaggttgcattatcctcacagccagctgggtaccagaaccaacatatt
gttgcagtaatagcagagtacatttatcatagaacgaacccattgttaccaaagctagca
acactgttcctgcgtagactggctgtggtattacctatgtctatactggcatgtctcggt
ggacaaggggaggctataagggatatctacctaatgaggttacactcagcaacagaggat
ctaagtttgaagacaggtatattggaactgctgtcagtatgtgtggacacccagccaggg
ttgattgaactcttcctcaatgtccagacaacacagccctctgatgcaaataaggatgtg
ttggttggaaggacaagttgcctgcagactgtgctagacctgatgctcttcaagaaacag
ggctcataccagtgtccaccagacctgctgtgtgcctgcaccaacttcatacaagcactg
tgggtggggatgagagaaacagccatggcagctctcagagcaaaggtgcatttctggcca
agcctatgtggacctttgcttaaagacctgtctgatgcctctgaggaaccgatgctgact
ttcaagttgaaaacagtgtcatacattttgaaagttttggctcaggaaatatatgtaaca
aacagcacaaaactagacgacaatttaaagaaaattctgaaagaattagcagaaaaaggc
agaatcaaatactggtcaacatatatcacagactgtataaagatggctgatgaagggtca
catgacatgtcattggacacaagcacagatgctgcggaacatccaatacacaaactgctt
cttgcctggaaaaacttcctggttgtgctggcgaaaataaatgttgtagaactgaagcta
gatgatggtttgaaggaactgatagttgtagacctactggaggccatacatgcacagttt
accaactctctgtcagagctgagacataagttgtcacagacatgcagtgctcttttcttt
acccttgtgaaaagctggacaagttccatcaaggtatggcgtcaggtgttagacaggacc
ctggagaccttgaccttgacaatgtcaagcggggatatgatcataccatctgtacagatt
ggattactgggatctgtaacagccattctacaatatcttaggctggaagcacacaagaag
gttgatgttcaaaagttgggaccaattctggtgtctacctgtgaagtattgctacagagt
accagagaattgccacaaccccaggagctgcgtcgactgagagaagcccaggaaagcaca
gaaaaatcattcgctcacacagatcataggctgaagttacagacagttgcatgttgcaca
gtagaggagttgatacatcatatcagagacagtgagatatggttacctatactacaagaa
aatatgatcttacctgcacttctgtcatcagctgatatatatctcaagacacaggagagc
ttgcattatctacagccattgtttatactcttcctcaccatagcgcaagataagaaggga
gctgagagtttagcaatggcaggtctgacccagcatgtgtgtctaccagtcacatattgt
taccagaatggagatgtctcgtaccctggtcccaaacctgggcagcagggtaaagcagtg
aggccccagcagccacaggtgacctggcacagtgtttactgtctgtgtttagacttatat
acaacgatgttggctaccatgaaatactcattcctggaagatgccttcaactttgtcggt
agtcaccaggataggcttcaacagtgtttagagatagcaaggtttagtttgagcagtgac
atgttccgtgaagtagagaagacgtgcttgtttgtcagtcatctagcaaacttcagtaga
gaatggaggctgcatttacctgaatctctcaataaaatactgttgagcctgttatacatg
tgccagacatttgtgtcattactgatacgacctagatatttacagtatattcttgagcat
caaggtataacgggagaacagcatgagagacgacacagtgaaaggttacctctaccaact
ctacaacatcaggcatctacagaggatatagatagtcctacagtacaacatgtacaagta
caacatagtatgttgaaggtgctaggggaatgttttgttgccttgcgacagtttagtcca
gatcttgtacagatacttgttgatcagaatatggatgttggagagtatgaaccatttcta
gctcttggattcagcacccctccagcagaccaggataccccacccacttttggaaccatg
ctgtcatgtgtcagtgttggtctccgtctcttgacaaagatggatggaagtaaatctcca
cagaagcaagacagcagcactacagcttctggtacccctgtactcagtcaacatgtttca
aagtcactggttatgtttgtgttagaaaatgccctgtatctcacaatgtctcagggaatg
ttgtacttgaaggatcctaatgttcagtccagagaaaaacagcttctcaaacgtgaactt
ggcacagaaatgaattcgatattgtctggtattcagcgctacataagaagaggtggacct
cagtctccggcatcttctacccagataagtcccagatctcagtcaccagcgggagctact
cttagtcgttccatttcacaaactttcttatccagtcaggaccatgctatttttagactt
gtgcaagaattttctaaacaagtgctaagatga
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integrated database retrieval system
