Mercenaria mercenaria (northern quahog): 123555637
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Entry
123555637 CDS
T07835
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123555637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123555637
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
123555637
mRNA cycle factors
Common to processing body (P body) and stress granule
123555637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Cytochrom_B559a
Motif
Other DBs
NCBI-GeneID:
123555637
NCBI-ProteinID:
XP_045202168
LinkDB
All DBs
Position
15:complement(57330537..57398214)
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AA seq
1165 aa
AA seq
DB search
MSSVAQMLRQAEALKASVSDTSKTISETWVMRQKLEDVYKKILLTDLEYALDKKVEQELW
NHAFKNQINNLQSQAKDKQNVKRAEIQATLNLFLETASGFYLQFLQLLCTTFKLDLPFRR
KSAFYGVMKERTPMKLKVTPPKKSSCLYVCQHCLVHLGDIARYRQQIDQAQTYYWHAAYL
VPFNGQPYNQLAILEAAKGNKLSTVFYYIRSLAVKVPFPVAATNLEKLYAKLTKETPDFK
GKLSASEMITGFLQFHALVHLCTDLIKAEELSEKLAAGLPAHVTSQSFPWQVLVHIVAIN
IFAMNHVHHMSDGHEDSGMTNGDSDLTDDEEKCFNLVFTLTVNMMDILLQYTPKQEHKVC
DYFTLPAVKLLLDWLKLNPQNFERPVLRNSPLWGNLCKVLNSIQAWQIKDGEQDLSKYED
LPLPEDAELRCFQPIEKAQSGCSYSKLPAEGLALDVEVRLRCHRLLEHGHWIKEEQPSVQ
LSVKPGTTGCMQFSSPTPPPQNKITKTVTLSVPSTHTNNTALLTTTAPSPERKSNRQNVA
IQAIMQKQAESTGKTVKIKDEPASPKYLLGVPTSEPLFFKTGGQRQPGQTTGSQSTQSSP
SPSKPVGHTGGVLVIKNQDVLNQTTSRPGNQSKSWQQQRQGSAGTSSWQQQQQQAKQQTE
KTGWPNLQPQSQVQGQPLQGQSQSSPWQQQNVPTRPQLSPQSGQGQWQFPGQPNFPRTEF
RTRSPMSLQMGAGNRVPGPNPTVQSPQGAFFPSTQSRPSFPIGQTVPQTQGQVSFGNEPG
FKGASGMLFNCPPDSSQGPPTSMQNSSPTDRFSSPHIGSGEGPNLPFGPNFASMFRHPPP
SRFPPPPNFQAPPPDHNLKSNQTPNLSGDGHVTRASGMGGANTFPGNQSSPHGNQANFSH
APGTERPQGDRGSSQQHQMPPNLQMPFSQNQFMNPFPGFMGFPGMSNNHMKSPLEALFGK
PRFPQEDIPPNMADIIGTLSKMAIQPPRENVLPPQRVGPSSFQGHAEGTPKPESYYTSQR
SSSVPAVNIDIETKPSDSAPSITLPPQQQQQQQPPGTYSLFSGSPWLSSGDSKSLGSSPF
SSESSSMRNSPDPSSDNYGGDMKSGGQGMDMGLRFVDDRSLKQGEQPPQGPYFQNNVQSI
WSSQAQSPLERLLELQKQQRQTEPH
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagtggcccagatgttaagacaagcagaggccctcaaggcaagtgtatctgat
accagtaaaaccatatccgaaacgtgggtaatgagacaaaaacttgaagatgtttacaag
aaaattctccttacagacctggagtatgctcttgacaagaaagtggaacaagaactatgg
aaccatgctttcaagaatcagataaacaacttacagtctcaagctaaagataaacagaat
gtcaagagagcagaaattcaggccacacttaacttatttttggagacagccagtggtttc
tatcttcagtttcttcagcttctgtgtaccacgttcaaactggatctgcccttcaggaga
aaatcagctttctatggtgtcatgaaagagagaacacctatgaagctaaaagtaactcca
ccgaagaagagctcctgtttatatgtctgtcagcactgtttggtacatcttggggatata
gcgaggtatcgacaacagattgatcaagctcaaacatattactggcatgctgcatatctt
gtaccatttaatggtcaaccgtacaatcagttagcgattctagaggctgccaaggggaac
aaactctctaccgtgttttactatatccgcagtcttgctgttaaagtgccatttcctgtt
gcggctaccaatcttgaaaaactctatgcaaaacttacaaaagaaactccagatttcaaa
gggaagttatctgccagtgagatgatcacaggttttctacagttccatgccttagttcat
ctttgtacagatctgataaaagcagaagaactctctgaaaaattggcggcaggtcttcca
gcacatgtgacctcacaaagttttccatggcaagtgcttgtacacatcgtggcaataaac
atctttgccatgaatcatgtgcaccacatgtcagatggtcatgaagattcgggaatgaca
aatggggactcagatcttacagatgatgaggaaaaatgtttcaatcttgtgtttacattg
actgtgaatatgatggacatcttgctacagtacacaccaaaacaggagcacaaagtatgt
gactatttcactcttccagctgtcaaactgctcctcgactggctcaaactgaaccctcaa
aactttgaacgacctgtcctcaggaactctccgttgtggggtaacttatgtaaggtgtta
aacagtattcaagcatggcagatcaaagatggtgaacaagacttatctaaatatgaagat
ttaccacttccagaagatgcggaattgcgatgttttcagccaatagaaaaagctcaaagt
gggtgcagttacagtaaactaccggcagagggcctggcattggatgtcgaggtgcgtctc
cgatgtcatagattattggaacatggacattggataaaagaagaacaacctagtgtacag
ttgtccgtcaagccgggcacaacaggctgtatgcagttcagttctcctaccccgccccca
cagaacaagattaccaagactgttaccctttcagtacccagcacccacacaaataataca
gctttgctaacaactacagctccaagccccgagagaaaatctaacagacagaatgttgca
attcaggccataatgcagaagcaggcggagagtacgggtaaaactgtaaaaataaaagat
gagccagcttcgcccaaatacctgctgggagtaccgacatcagagccattgtttttcaag
acaggcggacaacgtcaaccagggcagacgacaggaagtcagagcacacagtcgtcacca
tcaccatctaaacctgttggtcatactggtggtgtgttagtcataaagaaccaggacgtt
ttaaaccagactacaagtcgtcctgggaaccagtcaaagtcatggcaacagcagagacag
ggatcagcaggtacatcgtcatggcaacagcaacaacagcaagctaaacaacaaacagaa
aaaacaggctggccaaacttacagccacaatctcaggttcaaggtcagcctcttcaaggt
caaagtcagtcatctccatggcaacagcagaatgtaccaacacgaccgcagttatcacct
caatcaggtcaaggacagtggcaatttccaggccaacccaactttccaaggactgagttc
agaacaagaagtccgatgtcacttcagatgggtgctggaaacagggtaccaggcccaaac
cctacagtccagtcaccccaaggtgctttctttccatcgactcagtccaggccatcattc
cctataggacaaacagttccccagacacaagggcaagtttccttcggaaatgagccaggt
tttaaaggtgccagcggaatgctgtttaattgtcctccagattctagccaaggtccacca
acttctatgcagaattcttctccaacggacaggttttcttcacctcacataggctcagga
gagggcccaaatctaccatttggccccaattttgcctcaatgttccgtcaccctccacct
agtaggttccccccgccccccaatttccaggccccacccccagatcacaacttaaagtcc
aatcaaacaccaaatttatctggagatggtcatgtgacaagagcaagtggaatgggtggg
gctaacacattccccggtaaccagtcaagtccacatggcaaccaggcaaacttctctcat
gccccagggacagaacgaccccagggagacagagggtcaagtcaacagcaccagatgcca
ccaaatctacagatgccattttctcagaaccagttcatgaaccctttcccaggcttcatg
ggttttcctgggatgtcaaataatcacatgaaatctccactagaggcgctgtttggtaaa
ccacgattcccacaggaggatattccacccaacatggccgacatcatcggtacactcagt
aaaatggctatccagccaccaagggaaaatgtgttaccgccacaacgtgttggaccctcc
agcttccaaggtcatgcagagggcactccaaagccagagagctattatacatcacaaaga
agttcgtcagtaccagcagtgaatattgatatagagactaaaccttctgacagtgccccc
agcataaccctgcctccgcagcagcaacaacaacaacaacccccaggcacgtactcgttg
tttagtggctccccctggctctcctcgggagactcaaaaagtcttgggtcatcccctttc
tcatcggagtcgagcagcatgcgtaattcaccagatcccagctcagataattacggaggg
gacatgaagtcaggagggcaggggatggatatgggactgagatttgtagacgacaggagt
ctaaaacaaggggagcagccccctcaaggaccctatttccagaataatgttcagtcaatc
tggtcgagtcaggcacagtctcctttagaacgtcttcttgagcttcagaaacaacaaaga
cagacggaaccacattga
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