Mercenaria mercenaria (northern quahog): 123555802
Help
Entry
123555802 CDS
T07835
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03013
Nucleocytoplasmic transport
mmer03015
mRNA surveillance pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123555802
09122 Translation
03013 Nucleocytoplasmic transport
123555802
03015 mRNA surveillance pathway
123555802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123555802
03041 Spliceosome [BR:
mmer03041
]
123555802
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123555802
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123555802
Spliceosome [BR:
mmer03041
]
Complex C
Other components
EJC/TREX
123555802
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123555802
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
123555802
NCBI-ProteinID:
XP_045202325
LinkDB
All DBs
Position
15:complement(59321021..59340973)
Genome browser
AA seq
427 aa
AA seq
DB search
MADTENADELLDYDEEENETTAEGAGDAQQTKKDVKGTYVSIHSSGFRDFLLKPELLRAI
VDRGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLA
HTRELAFQISQDYERFSKYMNSIKIAVFFGGMPIKKDEEVLKKNCPHIVVGTPGRLLALI
KSKALSLKHVKHFILDECDKMLCELDMRSDVQEIFRMTPHEKQVMMFSATLSKDIRPVCK
KFMQDPMEVFVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRC
MALAQLLHEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPDDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNDVQERFEVNISELPDEIDI
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgatacagaaaatgccgatgaacttttggactacgatgaggaagaaaacgaaacc
accgcggagggggctggtgatgcccagcagaccaagaaagatgtgaagggaacatacgtc
tctatacacagttcaggtttcagagatttccttctcaaaccagaactcctcagagcaatc
gtagacagaggttttgaacatccatcagaagtgcaacatgagtgtattccccaggccatt
ctgtccatggatgtcttgtgccaagcaaagtctggtatgggtaaaacagcagtgtttgtt
ctagcaacattacaacagctggaaccagtagatggtcaggtatctgtcctagttctggct
catacaagagagttggcgttccagatcagccaggattatgagcgtttcagcaagtacatg
aacagcatcaagattgcggtcttctttggtggcatgccaatcaagaaggacgaggaagtg
ctcaaaaagaactgcccacacattgtcgttggtacaccaggtcgattactggctctgatc
aaatcaaaggcgctgagtctgaaacatgtaaaacatttcattttggacgaatgtgataag
atgctctgtgagcttgacatgagatctgatgtacaagagatattccggatgactcctcac
gagaagcaggtgatgatgttcagcgccacactcagcaaggatatccgccctgtgtgcaag
aagttcatgcaagaccctatggaagtatttgttgatgacgactcgaaactgacactgcac
ggtctgcagcagcattacgttaaactgaaggacaatgagaagaacagaaaattgttcgag
ctgctggatgtattggaattcaatcaggtaatcatctttgtgaagagtgtacagcgatgc
atggccttggcccaactgttgcatgaacagaactttccagccatagctatacacagagct
atgacacaagaagaaaggttgtcccgttaccaacagttcaaggatttccagaagcgtatt
ctggtagccacaaatctgtttggacgtggtatggatattgaacgagtgaacattgtcttc
aactatgacatgcctgacgattccgatacatacttacacagggttgccagagctggtaga
tttggtaccaaaggattggcaataacatttgtgtcagacgagacagatgccaaggtcttg
aacgatgtgcaggaaagatttgaagtgaacatctctgaattgccagacgaaattgacatc
tcgtcttacattgaaggacgatga
DBGET
integrated database retrieval system
