KEGG   Mercenaria mercenaria (northern quahog): 123556367
Entry
123556367         CDS       T07835                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mmer  Mercenaria mercenaria (northern quahog)
Pathway
mmer03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmer00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123556367
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mmer03041]
    123556367
Spliceosome [BR:mmer03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    123556367
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_Gbeta WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_TEP1_C ANAPC4_WD40 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_EML Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT122_1st WD_LRWD1 Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_WDR19_1st Ge1_WD40 Beta-prop_WDR11_1st Beta-prop_ACSF4 Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 123556367
NCBI-ProteinID: XP_053381397
LinkDB
Position
15:62299191..62313977
AA seq 280 aa
YYRSGLCKLWSVPDCSEIRTLRGHNCNVGAIVFHPRATIDLEDTACCMASCSQDGAVKLW
NLVGDEPVADIEGHAPFRVSRLAYHPSGRFLATCCFDNSWRLWDLEAQDEILHQEGHSKP
VYDICFQCDGALAATGGLDAYGRVWDLRTGRCIMFLEGHLKSVLAVDFAPDGYHLATGSE
DNTTKIWDIRQRRCVYTIPAHKNLISKVKFQPNHGRYLVTASYDSTAKVWAHPVGAPIKT
LAGHEGKVMGVDISPDLQYIATVSFDRTFKLWASEVKGGL
NT seq 843 nt   +upstreamnt  +downstreamnt
tattacaggtcaggcctgtgtaagctgtggtcagtgccagattgttcagagataagaaca
cttagaggtcacaactgtaatgtaggtgcaatagtattccatcctcgcgctactatagat
ttagaagacacagcgtgttgtatggcgtcttgtagccaggatggggctgtcaaactctgg
aatcttgtgggagatgaacctgtggcagatattgagggccatgcaccattcagagtatca
aggttggcgtatcacccatcgggcagatttttagccacatgttgttttgataactcatgg
cgactgtgggatcttgaagctcaggacgagatattacatcaagaaggacacagtaaacca
gtctatgatatctgttttcagtgtgatggagcgttagcagcaaccggaggtttagatgct
tatggaagagtatgggaccttagaactggaagatgtataatgtttttggagggacatctc
aaatctgtccttgcagttgattttgctccagatgggtaccatcttgctacaggaagtgag
gacaatactacaaaaatctgggacataagacagagacgatgtgtatacactataccagct
cataaaaatctcattagcaaagtcaaatttcaaccaaatcatggcagatatcttgttaca
gcatcatatgactctacagccaaggtttgggcacacccggtcggagcaccaatcaaaacg
cttgctggacatgaagggaaagtgatgggtgtcgacatttccccggacctacaatacata
gcaacagtgtcatttgatagaacttttaaactgtgggcctctgaggtcaaaggtggatta
tga

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