Mercenaria mercenaria (northern quahog): 123556830
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Entry
123556830 CDS
T07835
Name
(RefSeq) replication factor C subunit 3-like isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03030
DNA replication
mmer03410
Base excision repair
mmer03420
Nucleotide excision repair
mmer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123556830
03410 Base excision repair
123556830
03420 Nucleotide excision repair
123556830
03430 Mismatch repair
123556830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmer03032
]
123556830
03036 Chromosome and associated proteins [BR:
mmer03036
]
123556830
03400 DNA repair and recombination proteins [BR:
mmer03400
]
123556830
DNA replication proteins [BR:
mmer03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
123556830
DNA Replication Termination Factors
ELG1-RFC complex
123556830
Chromosome and associated proteins [BR:
mmer03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
123556830
DNA repair and recombination proteins [BR:
mmer03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
123556830
Check point factors
HRAD17(Rad24)-RFC complex
123556830
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_lid_RFC1
AAA
AAA_22
ATPgrasp_ST
AAA_16
Sigma54_activ_2
nSTAND6
AAA_5
ABC_tran
SLFN-g3_helicase
ATPase_2
DUF815
AAA_30
Motif
Other DBs
NCBI-GeneID:
123556830
NCBI-ProteinID:
XP_045203794
LinkDB
All DBs
Position
5:33044703..33072313
Genome browser
AA seq
355 aa
AA seq
DB search
MSLWVDKHRPNSLHKLDYHKSQAQHLKKLVAGGDFPHLLVYGPSGAGKKTRIMCVLKELY
GSGVEKLRIEQHHFTTPSKKKLEISTISSNYHIEVNPSDVGNNDRVVIQELIKTVAQVNQ
LETSAQRDFKVVVLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPAIKSRCL
GIRVPAPSVDEVCQVLQSVCKKEGLSLPLELAKRIAEKSNRNLRRALLMCEACRVQQYPF
SADQTVSEPDWEVYLRDTANMIVQQQSPKRLFEVRGRLYELLTHCIPADVIMKGLLQNLI
NSCDGELKTEVSQTAAYYEHRLQLGQKAIYHLEAFVAKFMAIYKRFLEEGIADIF
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgagtctttgggtagacaagcaccgtcctaactctttacataagcttgattatcataag
agtcaagctcagcatttgaaaaagcttgttgcaggaggtgattttccccacttgttagtg
tatggaccttctggagctggcaagaagactcgcattatgtgtgtattgaaggaattgtat
ggatcaggagtggaaaaactaagaatagagcaacatcattttacaacaccttcaaagaaa
aaattggagatttccacaatatcaagcaattatcacatcgaagttaaccccagtgatgtg
ggcaacaatgatcgtgtagtgatacaagaattgattaaaacagttgcacaggtcaatcag
cttgaaacatctgcacaaagggactttaaagttgttgtgttaactgaggttgacagactg
acaaaggatgcacagcatgcactacgtcgcactatggagaaatacatggcaacttgtcgt
cttatcttgtgctgtaactccacaagtaaagtcataccagctataaagagcagatgtcta
ggaatacgagttccagctccttctgtagatgaggtatgtcaggttctacagtctgtgtgt
aagaaggaaggcctaagtttgccactagagcttgccaagagaatagctgagaaaagtaac
cgtaatcttcgacgtgcattgctcatgtgtgaggcatgcagagttcaacaatacccattt
agtgctgaccagacagtaagtgagccagattgggaggtgtatctgagagatactgccaat
atgatagttcagcaacagagccctaaaagattgtttgaagtgcgaggtcgactgtatgaa
ctgctgacacattgcattcctgctgatgttataatgaagggtttgctacagaacttgatc
aatagttgtgacggggagttgaaaaccgaggttagccagacagcagcgtactacgaacat
agacttcagttaggacagaaagcaatctaccatttagaggcatttgtggctaaatttatg
gcgatttataaacgattccttgaagaaggcatagcagacatattttga
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