Mercenaria mercenaria (northern quahog): 123556922
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Entry
123556922 CDS
T07835
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123556922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123556922
03041 Spliceosome [BR:
mmer03041
]
123556922
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123556922
Spliceosome [BR:
mmer03041
]
Complex B
Other components
Prp19-related factors
123556922
Complex C
123556922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_15
TPR_2
TPR_12
PPR
TPR_10
PPP1R21_helical
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
123556922
NCBI-ProteinID:
XP_045203954
LinkDB
All DBs
Position
15:65221076..65354628
Genome browser
AA seq
859 aa
AA seq
DB search
MVVKYFQDAADNMPVVDRNTLKNIFFEEDDLPFEEDILRNPFTVKCWLRYIEHKKDSGAS
ALNVIYERALKELPGSYKLWYSYLKLRRLQVRGMCITEPAYEDVNSAHERSLVFMHKMPR
IWLDYCELLMSQGLITRTRQTFDRALRALPITQHHRIWPLYLKFVRMYDLKETAVRVYRR
YLKLSKENAEEYIEYLKSIGWLDEAAQRLADIINDDSFVSKEGKSKHQLWNELCDLIAKN
PDKVTAMNIEPIIRQGLKRYTDQIGVLWNSLADYYIRGGHFERARDIYEEAVQTVITVRD
FTQVFDAYAQFEKNLISAKMESMEEEGPTEEDDLDLELRLARLESLMDRRPLLLNSVLLR
QNPHNVHEWHKRVKLYEGKPREIITTYTEAVQTVDSKIASGKPHTLWCEFAKFYETADQI
EDARIIFDKAIKVPYKHVDDLASVYCEWAEMEIRHENYEASLKIMQKATTPPPRKVSYHD
ETETVQSRVHKSLKVWSLYADLEESFGTFKTCKAVYDRIIDLRIATPQIVMNYGLFLEEN
NYFEEAFKAYEKGIALFRWPNVYDLWNTYLTKFIDRYGGEKLERSRDLFEQCLENCPAKF
AKAIYLLYAKLEEEYGLARHAMAVYDRATQAVLPEEQNEMFNVYIKRAAELYGVTYTRPI
YEKAIEVLNHDQAREMCIRFADLERKLGEIDRARAIYAHCSQICDPRSTAGFWQTWKEFE
IKHGNEDTVREMLRIKRSVQAMYNTQVNFMSAQMLAAATSKGDSQETSEASDEMQKLEEK
ARQLAEEAMKDKNKPDKGIMFVRSNTTTDEELGEMTKTVNPDEINIDEDYSTDEDEEVEE
VQAQTVPTEVFGGLVQEDD
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggttgttaaatatttccaagacgccgctgacaatatgcctgtagtagataggaacact
ttgaaaaatatttttttcgaggaggatgaccttccctttgaagaggatatactgagaaat
ccgttcactgtaaaatgttggctaaggtatattgagcacaagaaagattctggtgcatct
gcacttaacgttatctatgagagggctctgaaagaattgcctggcagttacaagttatgg
tacagctacctgaagctgcgccgacttcaggtgcgtggaatgtgcatcacagagcctgct
tatgaagatgtgaacagtgcacacgaaagatccctcgtgtttatgcataagatgccgagg
atatggttggactactgtgaactgttgatgagccagggtttgatcactagaacacgtcaa
acgtttgacagagctcttcgtgctttgccgattacacaacatcacaggatctggccacta
tatctcaagtttgtacgcatgtatgatctcaaagaaacagcagtgagggtgtatagaaga
taccttaagttgagtaaggagaatgcagaagagtatatagaatacttaaagtctattggc
tggctggatgaagctgctcagcgattggctgatattatcaatgatgacagctttgtatct
aaagaaggcaagtcaaaacatcagttatggaatgagctttgtgatctgattgctaagaat
cctgacaaagtgacggcaatgaacattgaaccgatcattcgtcagggattaaagagatac
accgaccagattggcgtgctctggaattcccttgctgattattatattcgtggtggacat
tttgaaagggctcgggatatttatgaggaagcagttcagactgttataacagtgagagat
ttcacgcaagtatttgatgcctatgcacagtttgagaaaaatctgatcagtgctaagatg
gaatctatggaagaagaaggacctacagaggaagatgatctagatttagagttacgattg
gcaagacttgagtcactgatggatagacgaccccttcttctaaacagtgttttactacga
cagaatcctcacaatgtacatgagtggcataaaagagtgaaactgtatgagggtaaacct
agagagattataactacatacacagaagctgtgcaaacagtggattcaaaaatagcctct
ggtaaaccacatacactttggtgtgagtttgcaaaattttatgagacagcggaccaaata
gaagatgcaagaataatatttgacaaagccattaaagttccgtataaacatgtagatgat
ttagcttctgtgtactgtgagtgggctgagatggaaatcagacatgagaattatgaagcc
tctctgaagatcatgcagaaagcaacgacacctcctccaaggaaagtttcctaccatgat
gagacagagacagttcagtccagagttcacaagtcacttaaggtgtggtccttgtatgct
gatcttgaagaaagctttggaacattcaagacttgtaaagctgtatatgacagaattatc
gatctgcgtatagcaactcctcagattgttatgaactatggtctgtttcttgaagagaac
aattattttgaagaagcattcaaggcgtatgagaagggtattgcattgttcagatggcca
aatgtgtatgatctgtggaatacttaccttacaaaatttatagaccgatatggtggagaa
aaattggagagatccagagatttgtttgaacagtgtctggagaattgccctgccaagttt
gccaaagcaatttatttgctgtatgcaaaactagaggaagaatatgggctggctcggcac
gctatggcggtatacgacagagcaactcaagctgtgttaccagaagaacaaaatgagatg
tttaacgtttatatcaaacgcgcagcagaattatatggtgtaacgtacacaagacctatc
tatgagaaagctatagaggttctaaaccatgaccaagccagggagatgtgtataagattt
gctgatttggagcgtaaacttggtgagattgacagagctcgggcaatttatgcacattgt
tcccagatttgtgatccaaggtcaacagcaggtttctggcagacatggaaggaatttgaa
atcaaacacggcaatgaggatactgttagagaaatgttgcgaatcaaacgtagtgtacag
gcaatgtataacacacaggtgaacttcatgtccgctcaaatgttggctgcagcaacctcg
aagggagatagccaagaaacatctgaggcgagtgatgagatgcagaaacttgaggagaag
gctagacagctggcagaggaagcaatgaaagataaaaataaaccagacaaaggaataatg
tttgtcaggagcaatacaacaactgatgaggagctgggagagatgacaaagacggttaat
cctgatgagattaacatcgatgaggattactctactgacgaagatgaagaagtggaagaa
gtacaagcacagacagtacctacagaagtttttggaggacttgttcaagaagacgattag
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