Mercenaria mercenaria (northern quahog): 123557054
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Entry
123557054 CDS
T07835
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123557054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123557054
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123557054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
123557054
NCBI-ProteinID:
XP_045204187
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Position
5:complement(43915606..43947552)
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AA seq
492 aa
AA seq
DB search
MRHVFKMATVVAKPPGVTEDDEEWLYGDSGGNKEPAAPGTGPEEKLPPLKEDVENTENSQ
PQTETNNDDDDDSDDEDNVQVTIGDITAFPVASTGSNLFKPTSTYQKQPVTAGSAQKGAV
TTQATKGVDVDGEGTVNGIPLYEFSLDTLRDEDKPWRKPGADITDYFNYGFNEETWRKYC
QKQNRIRAENGVTIPKAFGSVGYGTTVKVESSEHHSGPSHFTKTYTPASQQPTAIAVLGS
TTASRRPIEETMDDVQQIGTLSSDTNKSSVPPTLPPVGLPPPDYSVPPPGMPPMPPGFSP
AVPPPGMNVPPPNMYGHPPPVPPPFFPPHHVPPPSSTQYPNPDRPTYSYDATPPASGYSD
SKSSWDRDRDRDRDSYRDRDRDRDRDSDGSDDYRYSRSSKDYGRDYDRDYYRSRDSERSR
SDRDRSRSRERDSRRHRDRDRDRDDKKSKRKVKDEPDDSDYYKSSSSSKHKKSKRSKRDK
DDESDKQTDEGT
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgcggcacgttttcaagatggcgactgtagtcgccaaacctcccggcgtcactgaagac
gacgaagagtggctatatggggactctggtggtaacaaggagcctgcagctccaggcaca
ggaccagaagagaaattgccgccacttaaggaagatgtagaaaatacagagaacagtcag
ccacagacagagaccaacaatgatgatgatgatgattctgatgatgaagataatgtacag
gtcactattggtgacatcacagcattccctgtagcaagcacaggaagtaatctttttaaa
ccaactagtacataccagaaacaaccagtcacagcaggttcagcacaaaaaggagcagtt
actactcaggcaactaaaggagttgatgttgacggggaaggcacagtgaatgggatacca
ctttacgagtttagtcttgatacactgagagatgaggataaaccttggagaaaaccaggt
gctgatataacagactattttaattatggatttaatgaggaaacatggaggaagtattgt
cagaaacagaacaggataagagctgagaatggtgttactattccaaaggcatttggcagt
gttgggtatggaacaactgtcaaagtggaatcatctgaacaccattcaggtccatcacat
tttacaaaaacgtatacaccagcatctcagcagccaacagcaatagcagtacttggttca
acaacagcatctcgtcggcctattgaggaaactatggacgatgtacaacagatcggaact
ctcagttcagatacaaacaaatcgagtgtacctcccacattaccgcctgtaggactgcca
cccccagactatagtgtacctcccccaggcatgccacccatgcccccaggattctctcca
gctgtaccgcccccagggatgaatgtacctcctccaaacatgtatggccatcctccacca
gtaccacctccatttttccctccccatcatgtaccgcccccaagttctacacaataccca
aacccagatcggccgacatacagctacgacgctacaccaccagcatcaggctattcagat
tctaaatccagctgggatagggatagagacagagaccgtgattcctacagggaccgtgat
cgtgatagagatagagacagtgatggaagtgatgattacagatattcaagatcttcaaag
gattacggtagagactatgatagggattactacaggagtcgtgattcagaaaggtcaagg
tcagatagagacaggtcaaggtcacgtgaacgggacagcaggagacatagagacagagat
agagacagggatgataaaaagtctaaaagaaaagttaaagatgaacccgatgattcagat
tattataagtcctcatcctcgtccaaacacaagaaatctaaacgatcgaagcgagacaaa
gatgatgagtcagacaaacaaacagacgaggggacgtga
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