Mercenaria mercenaria (northern quahog): 123557227
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Entry
123557227 CDS
T07835
Name
(RefSeq) putative protocadherin beta-18 isoform X1
KO
K16498
protocadherin delta 1
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
123557227
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mmer01009
]
123557227
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mmer04515
]
123557227
Protein phosphatases and associated proteins [BR:
mmer01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
123557227
Cell adhesion molecules [BR:
mmer04515
]
Cadherins
Protocadherins
123557227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Protocadherin
TMEM154
DNER_C
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
123557227
NCBI-ProteinID:
XP_045204508
LinkDB
All DBs
Position
5:51755198..51833644
Genome browser
AA seq
1069 aa
AA seq
DB search
MMSNCLLYLFFFGIVLKSVKGIVTITFETEEEITGNVFLGNIAAKLGANETEIFGGNLEG
ANYNILKSGDVDYSDYFDFNSATSDFYLKQKVDREEVCQQSEVCKMRVILFGNSGTVTEF
VNINVTVKDINDNIPTFSESVKNLYIQEGTAIRTSYTLTPAIDLDSGINAIQEYILEPSR
TDFELEKQQNLDGSSTLNLILNLSLDRESTHNYTLYVKAVDGGTPPFTGTLTVNINVTDK
NDNRPIFQPAEYNATIDEDVEIDTVVITVSAIDRDIGENSRLAYYFADSVTSDIRQYFGI
KETSGNIFVKEMLDSASRPFIFFIEVKDHGDPMKKSQAKVTINIRDKNNNRPVIEMSPSS
NINIKENLNIGTHVALVIVSDEDSGLNGEADCECLNSSFTIMKASEVAQNTFSLVSAVEF
DRELQAFYTVEINCSDKGQPPLSSNHTFIVTITDENDHTPIFAKTIYTVDILENISVGAV
FEKVQATDRDIDQNGKIVYEIEPFAESSMFEIDPDGGHIKAAERFDRETEDEYYFIVTAR
DQGPNKRSATAQVIVHVKDVNDNSPAFIGDSYAMSILENSNISYSLGTVTATDADLDDNG
KVSYMIPAKYAMFPFAILDDGTVITTEGLDREVRDYYHFNVVASDHGNPPRTSSVPVFVT
VLDQNDNAPIVEFPYGDNDTVTVAHDTGPDIVIASVLADDNDDKENKRLSYSIRSGDSEG
LFHIDSETGEIYLTKRISRGDIKRFTLTLSIKDNGVKPLETHATLHVTFYLADTDTVADA
AVGSKGQNILIAIVISCVTFVLSVIIIVIICMIRRKDSKNSLYNAKAYDEQKIMEGHRNS
NRSSSSRGSQDKMLYPSEKAYMENGYAKKAKKEVSFIVEEDQDTGVSMETNGQFDSVSTF
TGKSPSPVPSKSPDYENYNQEISPPRSEKSEDKQREIHRMTSLRVHQALIQSQNNNNNNK
QWPQSPGDEPARTFIGLTKRHNLDDSHSESSGETTTSDSGRGGSEEDIRSSMTISHDTDE
SRSPNMSTSHPFYTSDNRQPTFSSFHGNNVHKTGPILSSFLKQNKKTAK
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctaattgtttactttatttgtttttcttcgggatagtgcttaagtcagtgaaa
ggaattgtgactattaccttcgaaacagaggaagaaatcacaggaaatgtctttctggga
aacattgcagcaaaattaggagcaaatgaaactgaaatatttggtggcaatttggaaggt
gcgaactataacatcttgaagtcaggtgatgtagactactctgattattttgacttcaat
tcagcaacttctgatttttatttgaagcaaaaagttgatcgtgaggaagtctgccagcaa
agtgaagtatgtaaaatgagagtgatactttttggtaattctggcacagtcactgaattt
gttaacattaatgtcacagtaaaggatataaatgataatattccaacattttcggaatcg
gtaaagaatctatacatccaagagggaaccgcgattcggacaagctacactctgacaccg
gctattgatttagattccggcatcaatgcgatccaagaatatatactagaaccgtcgcga
actgacttcgaactcgaaaagcagcaaaatctggacgggtcatcaaccttgaatctcata
ctgaatttaagtcttgacagggaatccacacataactacacgttatatgtaaaggcagtg
gatgggggcacgccaccctttactggaactttaactgttaatatcaatgtcaccgataaa
aatgacaaccgaccaatttttcagccagcagagtacaatgctactattgatgaagatgtt
gaaattgatactgtggtaatcacagtctctgccatagatagagatataggtgaaaacagt
agactggcttactatttcgcagactctgtaacttcagatataagacagtattttggtatc
aaggagacaagtggtaacatttttgtgaaagagatgcttgattcggcaagtcggcctttt
atctttttcatagaagtcaaagatcatggggatccaatgaaaaagagccaagcaaaagta
acaattaatatcagggacaaaaataataatcgtccagtaattgagatgagtccatctagt
aatatcaacataaaagagaatttgaatatcggtacacacgttgccttggttattgtttcg
gacgaggacagtggtcttaacggagaggcagactgcgagtgtcttaattccagttttaca
attatgaaggccagtgaagttgcacaaaatacatttagtcttgtaagtgccgttgagttt
gatagggaactgcaggccttttatactgtagaaataaactgtagcgataaaggtcaaccc
ccattgtcttcaaatcacacatttattgttacaattactgatgaaaatgatcatactcca
atatttgcaaagactatttatactgtagatattttagagaatatttctgttggtgctgtt
tttgagaaagtccaggccacagaccgtgacattgatcaaaatggaaaaatagtgtatgaa
attgaaccatttgcagaatcgagtatgtttgaaattgatcctgatggcgggcatatcaaa
gctgcggaaaggtttgacagggagactgaagatgagtactatttcatagtaactgcacga
gatcagggcccaaacaagcgctccgctactgcacaggttattgtacatgtcaaagatgtt
aatgacaattctcctgcttttattggtgacagttacgccatgtctatactggagaattcc
aacatcagttatagtcttggaacagtaactgctacggatgctgaccttgacgacaatgga
aaagtttcgtatatgatacccgctaagtatgctatgtttccatttgcgattcttgacgat
ggaaccgtaataaccactgaaggtttagatcgtgaagtcagagattattaccattttaac
gttgttgcatcagatcatgggaatcctccacgtaccagcagtgtgccagttttcgtgact
gtgcttgatcaaaatgacaatgcaccaattgtagaatttccgtatggagataatgatact
gttacagttgctcatgatacaggtcctgatattgtaattgctagtgttttggccgatgac
aatgatgataaagaaaacaaacgtctctcgtacagtattcgaagtggggatagtgaaggt
ttgtttcatattgattcagagactggtgaaatttacctaacaaaacgtatttcgcgaggt
gatatcaaacggtttacattaactctatctatcaaagataatggtgttaagccactagaa
actcatgcaactttgcatgtgacattttacctcgctgatacagacactgtagcggatgct
gcggttggctctaagggacaaaatatccttatagctatcgttatatcgtgcgtcactttc
gtactttccgttattatcattgtaataatttgcatgataagaagaaaagacagcaaaaac
agtttatacaatgccaaagcatacgatgaacaaaaaattatggaaggtcatagaaacagt
aataggtcaagttcgtcaagaggttcgcaagataaaatgttgtatccgagtgaaaaggct
tatatggagaatggatacgcaaagaaagcaaagaaagaggtcagttttattgtggaagaa
gatcaggatactggtgtctccatggaaacaaatggacagtttgattctgtgtcaaccttc
actggtaaatctccatccccggtgccatctaagagtcctgattatgagaattataatcaa
gaaatttcaccgccgaggtcagagaaaagtgaagacaaacaacgtgagattcacagaatg
acatcacttcgtgtacatcaggctcttattcagtcacaaaataacaacaacaacaacaaa
cagtggccgcagtcacccggagatgagccggcgaggacatttattggattgacgaaacgc
cacaatctggacgactctcacagcgagagttcaggggagaccactacgagcgactcggga
cgtggcgggagtgaggaagacatccgtagcagtatgacaatctcacacgacacagatgag
tcacggagtccaaacatgtcaacctcgcatccgttctacacatcggacaatcgtcaaccc
acattttcgtctttccatggaaacaatgtacataagactggtcctatattatcatcattt
ttaaaacaaaacaaaaagacagcaaaatga
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